PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011069922.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family AP2
Protein Properties Length: 491aa    MW: 53033.3 Da    PI: 7.2546
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011069922.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.11.2e-14146204255
             AP2   2 gykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      ++GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  XP_011069922.1 146 IFRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEEKAARAYDLAALKYWG 204
                     69******************666664477446*************************98 PP
2AP247.35e-15247298155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  XP_011069922.1 247 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 298
                     57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.17E-21145214No hitNo description
SuperFamilySSF541716.54E-17145214IPR016177DNA-binding domain
PROSITE profilePS5103218.703146212IPR001471AP2/ERF domain
PfamPF008471.4E-11146204IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-15146213IPR001471AP2/ERF domain
SMARTSM003801.9E-28146218IPR001471AP2/ERF domain
PRINTSPR003676.4E-6147158IPR001471AP2/ERF domain
PfamPF008476.2E-10247298IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-18247308IPR016177DNA-binding domain
CDDcd000181.21E-23247308No hitNo description
PROSITE profilePS5103219.045248306IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-18248307IPR001471AP2/ERF domain
SMARTSM003801.5E-33248312IPR001471AP2/ERF domain
PRINTSPR003676.4E-6288308IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0040019Biological Processpositive regulation of embryonic development
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MDMDSPHHNW LAFSLSNHSL FQPLFNSNST ISGVGDHQEH GNGTADRHNL SVLGPKLENF  60
LGAAGSSSSA DGVAQFDGGA QAGISTMPGV EIYDESELKT IAASFLRGFS TEQTDDAQKQ  120
LAVAVAPPPD PPAKKAAETF GQRTSIFRGV TRHRWTGRYE AHLWDNSCRR EGQSRKGRQV  180
YLGGYDKEEK AARAYDLAAL KYWGATTTTN FPVSEYEKEM EEMKHMTRQE FVASLRRKSS  240
GFSRGASIYR GVTRHHQHGR WQARIGRVAG NKDLYLGTFS TQEEAAEAYD IAAIKFRGLN  300
AVTNFDMSRY DVRSIASSNL PIGGATNKSK TASESISDSR SIDGLNSEGN NKDLSSSTSS  360
VPYPSQNLAA TISFALPMKQ DQSTWAALGY QNPAKNPNTS GSTVLTNGTT PHFGMEFQDS  420
NNEGLIFTGG NGGYYGTTSS SVATTNEGAS RNAVDGGGGE WVAPVVVHGG FVQAGRRRNL  480
SAFQTPIFGM E
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011069922.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011069922.10.0AP2-like ethylene-responsive transcription factor AIL5 isoform X2
SwissprotQ6PQQ31e-146AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A4D9BLM40.0A0A4D9BLM4_SALSN; AP2-like factor, ANT lineage
STRINGMigut.J01490.1.p0.0(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-126AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]