PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011070054.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C2H2
Protein Properties Length: 296aa    MW: 33952.1 Da    PI: 9.6422
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011070054.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.17.4e-062650123
                    EEET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
                    ++Cp  +C+ s++rk++L+rH+  H
  XP_011070054.1 26 FTCPvdNCHSSYRRKDHLTRHMIQH 50
                    89********************887 PP
2zf-C2H218.17.5e-065580123
                    EEET..TTTEEESSHHHHHHHHHH.T CS
         zf-C2H2  1 ykCp..dCgksFsrksnLkrHirt.H 23
                    ++Cp   C+++F  + n+krHi+  H
  XP_011070054.1 55 FECPieECKRRFAFQGNMKRHIKElH 80
                    89*********************988 PP
3zf-C2H220.21.5e-0694118123
                     EEET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                     y+Cp   Cgk+F+  s L +H  +H
  XP_011070054.1  94 YVCPelGCGKVFKYLSKLSKHEDSH 118
                     9********************9888 PP
4zf-C2H214.30.00012185209223
                     EET..TTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                     kC+   C  +F + snL++H++  H
  XP_011070054.1 185 KCSfkGCLHTFATESNLNQHMKAvH 209
                     688889***************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.49E-62352No hitNo description
Gene3DG3DSA:3.30.160.601.3E-82352IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.5982655IPR007087Zinc finger, C2H2
SMARTSM003550.00482650IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002802850IPR007087Zinc finger, C2H2
SuperFamilySSF576677.21E-65381No hitNo description
Gene3DG3DSA:3.30.160.607.6E-65377IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0235580IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.6585585IPR007087Zinc finger, C2H2
PROSITE patternPS0002805780IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.6E-790118IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.002894118IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.7294123IPR007087Zinc finger, C2H2
PROSITE patternPS00028096118IPR007087Zinc finger, C2H2
SMARTSM003554.3126151IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280128151IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.5E-4128149IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035523154175IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.68E-7167222No hitNo description
PROSITE profilePS5015712.279184214IPR007087Zinc finger, C2H2
SMARTSM003550.0011184209IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.609.6E-6185211IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280186209IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.2E-4212237IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003559.4215241IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280217241IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MQEASSTLNG LVPGGRPPEK LCQRPFTCPV DNCHSSYRRK DHLTRHMIQH QGKLFECPIE  60
ECKRRFAFQG NMKRHIKELH QESSSTNVEP PKEYVCPELG CGKVFKYLSK LSKHEDSHVK  120
LDTAGAFCSE PGCMKYFTNK QSLKEHLCSC HQYIVCDKCG SKQLKKNFKR HLSMHEAAIS  180
MERIKCSFKG CLHTFATESN LNQHMKAVHL GLKPYACSIP GCHMKFAFKH VRDKHKKSGY  240
HVYTPGNFEE SDEQFRSRPR GGRKRKRPTI ETLLRKRVVP PTNSDVSKLL SADSDD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1257265RPRGGRKRK
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011070054.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070054.10.0transcription factor IIIA isoform X2
SwissprotQ84MZ47e-82TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A068V6C11e-139A0A068V6C1_COFCA; Uncharacterized protein
STRINGVIT_08s0040g00240.t011e-137(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.19e-99transcription factor IIIA