PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011070354.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

Nin-like

Protein Properties

Length: 927aa MW: 101838 Da PI: 5.5412

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011070354.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91	9.1e-29	584	634	1	51
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiks 51 aek+isle+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki++ XP_011070354.1 584 AEKTISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINK 634 589**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.404	570	656	IPR003035	RWP-RK domain
Pfam	PF02042	9.9E-26	587	634	IPR003035	RWP-RK domain
PROSITE profile	PS51745	25.474	832	914	IPR000270	PB1 domain
SMART	SM00666	1.6E-26	832	914	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	1.1E-26	832	913	No hit	No description
Pfam	PF00564	4.5E-18	832	913	IPR000270	PB1 domain
SuperFamily	SSF54277	1.05E-22	832	916	No hit	No description
CDD	cd06407	1.93E-37	833	913	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0010118	Biological Process	stomatal movement
GO:0010167	Biological Process	response to nitrate
GO:0042128	Biological Process	nitrate assimilation
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 927 aa Download sequence Send to blast
MKMPSEPEDE TTRQPAPAEV LMDLDLDLDG SWPLDQIFAA AAAASNPASP FLLSNSEQPC 60 SPLWAFSDDN NSGCFAAGAG FRLADSSRIL SYAGNPDTAT ESAVGNDDRK KLPSPFMGLM 120 PIDNPDGSCI IKERMTQALR YFKDLTEQHV LAQVWAPVKN GGRYMLTTSG QPFVLDPNSN 180 GLHQYRLVSL MYMFSVDGDT DGDLGLPGRV FRQKLPEWTP NVQYYSSKEF PRLNHALHYN 240 VRGTLALPVF EPSGQSCVGV LELIMTSQKI NYAPEVDKVC KALEAVNLKS SEILDHQSTQ 300 ICNEGRQNAL AEILEIITVV CETHTLPLAQ TWVPCRHGSV LANGGGFKKT CSSFDGSCMG 360 QVCMSTTDVA FYVVDARIWG FREACAEHHL QKGQGVAGRA FASHNVCFCQ DITEFCKTEY 420 PLVHYARMFG LKSSFAICLR SKHTGNDNYI LEFFLPPTIR SYEDQQTLLD SLLVTMKQHF 480 GSLRVASGKN LDDEWRSIEI IKASVDDKLN LRPDFAATSP PRPSSVPNGE TVQLDALEGQ 540 VVMTEFNATN IKGNVGSPTE VHNAASGGET KDTGKKPERK RGKAEKTISL EVLQQYFAGS 600 LKDAAKSLGV CPTTMKRICR QHGISRWPSR KINKEEKKEV SITKAPGADE QAEGSNHILG 660 DRNVETQKLT HGAGFLPGEC SNRSRTGSGS REESTGTPTS QGSCQGSPCR RNETSPQNDP 720 VVSPIDEHHM KMGGSHELVC QQTREINLSA AFPAPDNFMT VPEEPFGGML VEDAGSSHDL 780 RNLCPAGEAL FDEHVTEYSW TKPPCADTIP KDRLAAPADH MPRFASRPEV KTITIKATYR 840 EDIIRFRIPI DSGIVKLKEE VAKRLKLELG TFDIKYLDDD HEWVLIACDA DLQECVDISR 900 SSGSNIIRLL VHDIMANLGS SCESSGE

Sequence ? help Back to Top

Protein Sequence Length: 927 aa Download sequence Send to blast

MKMPSEPEDE TTRQPAPAEV LMDLDLDLDG SWPLDQIFAA AAAASNPASP FLLSNSEQPC  60
SPLWAFSDDN NSGCFAAGAG FRLADSSRIL SYAGNPDTAT ESAVGNDDRK KLPSPFMGLM  120
PIDNPDGSCI IKERMTQALR YFKDLTEQHV LAQVWAPVKN GGRYMLTTSG QPFVLDPNSN  180
GLHQYRLVSL MYMFSVDGDT DGDLGLPGRV FRQKLPEWTP NVQYYSSKEF PRLNHALHYN  240
VRGTLALPVF EPSGQSCVGV LELIMTSQKI NYAPEVDKVC KALEAVNLKS SEILDHQSTQ  300
ICNEGRQNAL AEILEIITVV CETHTLPLAQ TWVPCRHGSV LANGGGFKKT CSSFDGSCMG  360
QVCMSTTDVA FYVVDARIWG FREACAEHHL QKGQGVAGRA FASHNVCFCQ DITEFCKTEY  420
PLVHYARMFG LKSSFAICLR SKHTGNDNYI LEFFLPPTIR SYEDQQTLLD SLLVTMKQHF  480
GSLRVASGKN LDDEWRSIEI IKASVDDKLN LRPDFAATSP PRPSSVPNGE TVQLDALEGQ  540
VVMTEFNATN IKGNVGSPTE VHNAASGGET KDTGKKPERK RGKAEKTISL EVLQQYFAGS  600
LKDAAKSLGV CPTTMKRICR QHGISRWPSR KINKEEKKEV SITKAPGADE QAEGSNHILG  660
DRNVETQKLT HGAGFLPGEC SNRSRTGSGS REESTGTPTS QGSCQGSPCR RNETSPQNDP  720
VVSPIDEHHM KMGGSHELVC QQTREINLSA AFPAPDNFMT VPEEPFGGML VEDAGSSHDL  780
RNLCPAGEAL FDEHVTEYSW TKPPCADTIP KDRLAAPADH MPRFASRPEV KTITIKATYR  840
EDIIRFRIPI DSGIVKLKEE VAKRLKLELG TFDIKYLDDD HEWVLIACDA DLQECVDISR  900
SSGSNIIRLL VHDIMANLGS SCESSGE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00449	DAP	Transfer from AT4G24020	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011070354.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011070354.1	0.0	protein NLP7 isoform X2
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	A0A2G9I7V1	0.0	A0A2G9I7V1_9LAMI; Uncharacterized protein
STRING	Migut.E00644.1.p	0.0	(Erythranthe guttata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]