PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011070385.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family HD-ZIP
Protein Properties Length: 201aa    MW: 23016.6 Da    PI: 8.0642
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011070385.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.94.7e-201366356
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    +R++f+++q++ Le++Fe ++ p  + +++LA+klgL+ rqV +WFqN+Ra+ k
  XP_011070385.1 13 NRRRFSDDQIKSLETMFETESRPELRLKQHLANKLGLQPRQVAIWFQNKRARSK 66
                    699*************************************************99 PP
2HD-ZIP_I/II109.62.1e-3513103292
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                     ++rr+s++q+k+LE++Fe+e++ e + K++la++Lglqprqva+WFqn+RAR k+kq+E++y++Lk++yd+l+++ e+L+ke+++L ++++
  XP_011070385.1  13 NRRRFSDDQIKSLETMFETESRPELRLKQHLANKLGLQPRQVAIWFQNKRARSKSKQIEQEYSMLKSNYDKLASQFEALRKENQNLLTQVD 103
                     589***********************************************************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.8E-18776IPR009057Homeodomain-like
PROSITE profilePS5007117.459868IPR001356Homeobox domain
SuperFamilySSF466892.22E-171080IPR009057Homeodomain-like
SMARTSM003892.2E-161072IPR001356Homeobox domain
PfamPF000462.2E-171366IPR001356Homeobox domain
CDDcd000862.07E-141469No hitNo description
PRINTSPR000319.6E-53948IPR000047Helix-turn-helix motif
PROSITE patternPS0002704366IPR017970Homeobox, conserved site
PRINTSPR000319.6E-54864IPR000047Helix-turn-helix motif
PfamPF021835.5E-1568107IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MSGGIKKSSR NINRRRFSDD QIKSLETMFE TESRPELRLK QHLANKLGLQ PRQVAIWFQN  60
KRARSKSKQI EQEYSMLKSN YDKLASQFEA LRKENQNLLT QVDRLRRLAD NGDGDEHDNK  120
NHFTLSSSEN PRLLLDINCQ ELCIPTCSDL NRKVGYLEEE ADALNMAQIA GGSLASPENR  180
GSFDSSTFLD NTGSGSQWWN F
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011070385.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070385.11e-148homeobox-leucine zipper protein ATHB-12-like
SwissprotP468973e-37ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBLA0A2G9GG261e-106A0A2G9GG26_9LAMI; Uncharacterized protein
STRINGMigut.E00626.1.p7e-89(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA102732125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.11e-39homeobox 7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou SF, et al.
    Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis.
    New Phytol., 2015. 208(1): p. 188-97
    [PMID:25919792]