PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011070391.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family GRF
Protein Properties Length: 520aa    MW: 55908.8 Da    PI: 8.2181
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011070391.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC75.55.5e-24180224145
             WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                     d+ep+rC+RtDGKkWRCsr+v +++k+CErH h++r rsrk++e 
  XP_011070391.1 180 DPEPWRCKRTDGKKWRCSRDVAPDQKYCERHAHKSRPRSRKHVEV 224
                     79****************************************985 PP
2QLQ42.22.4e-15119151234
             QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqa 34 
                      FTa+Q+q+L++Q  + Ky++a+ PvPp+Ll++
  XP_011070391.1 119 LFTASQWQELERQKVIHKYIMASIPVPPQLLLP 151
                     6*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.5E-6118154IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166616.896119154IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088805.0E-10120151IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.432180224IPR014977WRC domain
PfamPF088793.5E-19181223IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0009941Cellular Componentchloroplast envelope
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MRNGSERKSS SPSMLDCDVG LGLKMQLPPS ESYSCKKGMA LNLCDYQRQL ACSRRNANLT  60
SYAGDGGGSG GPTFGNAGNQ VACFGDLYGA ADTLSLPRIS HSTALGASGG SMAVSGKALF  120
TASQWQELER QKVIHKYIMA SIPVPPQLLL PTSSTSSPLP SLSQSNTSGL DLRFSSNGSD  180
PEPWRCKRTD GKKWRCSRDV APDQKYCERH AHKSRPRSRK HVEVSAHNPS SQQQPLILPA  240
TSTTTPPLTQ PLQTSTPQFP TMASTASFDK TRCVEWFMRG GSSSSSRDTV PVSTCNQQQQ  300
QQWQQLIQTS SSSSSSSRLE LNRDNTDHAK NVSLYQYEGN KQGFMSLNHY IPDTISLQRL  360
EHHQHQQHQL SSSFLDSKMG SLQESCLSLN TDQGAQTTTR HFIDALSKKF SPSALSLSMS  420
GGNGADGDNE NSDLGNVGMM MNSDRDSDGV LKSQWLSSAS WMNSPPGGPL GEALCLGNAS  480
GTRAGGSNLP SPHGYSNSNT NSSCSKSSCE DGSHALNFIG
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011070391.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ0327132e-42KJ032713.1 Sesamum indicum clone TilSSR_3914 microsatellite sesame_3914 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070391.10.0growth-regulating factor 8 isoform X1
STRINGXP_009625634.13e-92(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA125171820
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24150.13e-29growth-regulating factor 8