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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | XP_011070771.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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| Family | bHLH | ||||||||
| Protein Properties | Length: 329aa MW: 35964.9 Da PI: 7.7228 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
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| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 34.7 | 3.2e-11 | 109 | 156 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
h Er+RRdr+++++ LrellP+ K + ++ L A YI+sLq
XP_011070771.1 109 LHASSERKRRDRLREKLTALRELLPNT----TSKIDQVTLLDVAASYIQSLQ 156
47788*********************8....69******************9 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50888 | 14.367 | 105 | 155 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SuperFamily | SSF47459 | 3.14E-15 | 107 | 170 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene3D | G3DSA:4.10.280.10 | 6.1E-12 | 108 | 159 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Pfam | PF00010 | 1.0E-8 | 110 | 156 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| CDD | cd00083 | 8.57E-10 | 110 | 152 | No hit | No description |
| SMART | SM00353 | 2.4E-11 | 111 | 161 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 329 aa Download sequence Send to blast |
MSNQEIFIST TTTSQPPNCD SYVVVPENFD DFSNILSLLS DDGELQPVPM SSSMPLVQTG 60 EPSFGRKKTT HAFDESSPDH PRIQEGTSDD QGTGVARRRQ LRRRTHSKLH ASSERKRRDR 120 LREKLTALRE LLPNTTSKID QVTLLDVAAS YIQSLQSQLL LLSMGGMLLP RASIPGFGGQ 180 GIGLNPGMGF HVPCIPFQFH HMAAPVAPCV FPSVLIPKLD STLISNPVPI PKLDSTFISN 240 PVPGEYTAHL TAPSSFLNPH PGITQHEVWQ PRTNEMLLRS MWGSMTSTGG GPGLGRQGTP 300 FTNGVYRFPA WLSNLSSMTP SETNLPPTL |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 101 | 117 | RRRTHSKLHASSERKRR |
| 2 | 113 | 118 | ERKRRD |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | XP_011070771.1 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_020547038.1 | 0.0 | transcription factor bHLH119-like | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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