PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011070970.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family WRKY
Protein Properties Length: 515aa    MW: 56258.2 Da    PI: 7.6925
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011070970.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY109.81.3e-34228284259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     dDgynWrKYGqK+vkgsefprsYY+Ct+++Cpvkkkvers  d++++ei+Y+g+Hnh+
  XP_011070970.1 228 DDGYNWRKYGQKQVKGSEFPRSYYKCTHPNCPVKKKVERSL-DGQITEIIYKGQHNHS 284
                     8****************************************.***************7 PP
2WRKY107.56.4e-34402460159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vkg+++prsYY+Ct +gC+v+k+ver+a+dpk+v++tYeg+Hnh+
  XP_011070970.1 402 LDDGYRWRKYGQKVVKGNPYPRSYYKCTNPGCNVRKHVERAASDPKAVITTYEGKHNHD 460
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.4E-30220286IPR003657WRKY domain
SuperFamilySSF1182908.89E-27225286IPR003657WRKY domain
SMARTSM007741.4E-38227285IPR003657WRKY domain
PfamPF031061.5E-26228283IPR003657WRKY domain
PROSITE profilePS5081123.617228286IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.7E-37387462IPR003657WRKY domain
SuperFamilySSF1182909.55E-30394462IPR003657WRKY domain
PROSITE profilePS5081138.182397462IPR003657WRKY domain
SMARTSM007741.8E-40402461IPR003657WRKY domain
PfamPF031062.9E-26403460IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    Send to blast
MADNKPPPPP PSSSKPPPTI TLPPRTAMDN FFTGVSPGPM TLVSNLFAEN DADSDCRSFS  60
QLLAGAISSP AALPNVRQNF AHPQPESRGG GGGTGEFRFQ QSRPAGLVVT QPLGMFTIPP  120
GLSPASLLDS PGFFSSSQDP FGMSHQQILA RVTAQAQNQM QIQPEYPSLS SAPALSASHL  180
QPFPSNASLQ QQISPSLPDP KIMKESSDIS HTDQKSQPAS FNVDKPTDDG YNWRKYGQKQ  240
VKGSEFPRSY YKCTHPNCPV KKKVERSLDG QITEIIYKGQ HNHSPPSKRT KDTGNANGTM  300
NPQGNSELGS DGRTGNLNEP KEGLPYLSST RDLEASQATP EHISGSSDSE EVGNAEARLD  360
DEDKPESKRR NFEVQTSEQA SSHRTVTEPR IIVQTTSEVD LLDDGYRWRK YGQKVVKGNP  420
YPRSYYKCTN PGCNVRKHVE RAASDPKAVI TTYEGKHNHD LPVARGSSHS TANASLQLRP  480
HNSVADRSRA DGRMEFGSNE QQPVALLRFK EEQIT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-43228462878Probable WRKY transcription factor 4
2lex_A3e-43228462878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00260DAPTransfer from AT2G03340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011070970.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070970.10.0probable WRKY transcription factor 3 isoform X2
SwissprotQ9ZQ701e-169WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLA0A2G9GES30.0A0A2G9GES3_9LAMI; Uncharacterized protein
STRINGXP_009794188.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-169WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]