PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011070984.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family NAC
Protein Properties Length: 285aa    MW: 32836.9 Da    PI: 8.4018
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011070984.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM173.46.8e-5491341128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhPtdeel+++yL+++++++++++ ++i+evdiyk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra+ sgyWkatg+dk+++s 
  XP_011070984.1   9 LPPGFRFHPTDEELITYYLRNQAKSRPCPV-SIIPEVDIYKFDPWELPEKAEFGENEWYFFSPRDRKYPNGVRPNRAAVSGYWKATGTDKAIYS- 101
                     79****************************.89***************99999*****************************************. PP

             NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     +++ vg+kk Lvfykg+ pkg+k+dW+mheyrl
  XP_011070984.1 102 GSKFVGVKKALVFYKGKPPKGVKSDWIMHEYRL 134
                     999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.59E-675161IPR003441NAC domain
PROSITE profilePS5100561.4759161IPR003441NAC domain
PfamPF023658.8E-2710134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009825Biological Processmultidimensional cell growth
GO:0009835Biological Processfruit ripening
GO:0009908Biological Processflower development
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MVGGNSSDLP PGFRFHPTDE ELITYYLRNQ AKSRPCPVSI IPEVDIYKFD PWELPEKAEF  60
GENEWYFFSP RDRKYPNGVR PNRAAVSGYW KATGTDKAIY SGSKFVGVKK ALVFYKGKPP  120
KGVKSDWIMH EYRLTDSISN PNKQNGSMRL DDWVLCRIYK KKNQAKTPEH RLNHHEESFA  180
HILPTAAVDP QPYKFPRTCS LTHLWEFDYM ASISQLLHDD NNYASYNLSF SSQSETVTNH  240
SDAADGTQKS YHQPLPGQVQ LPYVDVPVKF QVNQPIFVNP LYQHQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-73916617170NO APICAL MERISTEM PROTEIN
1ut4_B9e-73916617170NO APICAL MERISTEM PROTEIN
1ut7_A9e-73916617170NO APICAL MERISTEM PROTEIN
1ut7_B9e-73916617170NO APICAL MERISTEM PROTEIN
3swm_A9e-73916620173NAC domain-containing protein 19
3swm_B9e-73916620173NAC domain-containing protein 19
3swm_C9e-73916620173NAC domain-containing protein 19
3swm_D9e-73916620173NAC domain-containing protein 19
3swp_A9e-73916620173NAC domain-containing protein 19
3swp_B9e-73916620173NAC domain-containing protein 19
3swp_C9e-73916620173NAC domain-containing protein 19
3swp_D9e-73916620173NAC domain-containing protein 19
4dul_A9e-73916617170NAC domain-containing protein 19
4dul_B9e-73916617170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence and reduces fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. {ECO:0000269|PubMed:29760199}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00221DAPTransfer from AT1G69490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011070984.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. {ECO:0000269|PubMed:29760199}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070984.10.0NAC transcription factor 29
SwissprotK4BWV21e-128NAP1_SOLLC; NAC domain-containing protein 1
TrEMBLA0A2G9FYW31e-140A0A2G9FYW3_9LAMI; Uncharacterized protein
STRINGPGSC0003DMT4000474401e-127(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA74624103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.11e-110NAC-like, activated by AP3/PI
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Ma X, et al.
    The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato.
    Plant Physiol., 2018. 177(3): p. 1286-1302
    [PMID:29760199]