PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011071238.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family CAMTA
Protein Properties Length: 962aa    MW: 107990 Da    PI: 6.7194
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011071238.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-11666.1e-52121272116
            CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 
                     ++e ++rwlk+ e+  iL+n+e+h+lt++ +++p+sgsl L+n++++r+frkDG+ w++++d +t+ E+he+LKvg+ve+l+cyYah+een++fq
  XP_011071238.1  12 VREaQTRWLKPVEVFLILQNYEEHQLTHQIPQKPPSGSLYLFNKQVLRFFRKDGHRWRRRRDQRTIAEAHERLKVGNVEALNCYYAHGEENSNFQ 106
                     45669****************************************************************************************** PP

            CG-1  96 rrcywlLeeelekivlvhyle 116
                     rr+yw+L+ ++e+ivlvhy++
  XP_011071238.1 107 RRSYWMLDPKYEHIVLVHYRD 127
                     *******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143773.4178134IPR005559CG-1 DNA-binding domain
SMARTSM010762.3E-6511129IPR005559CG-1 DNA-binding domain
PfamPF038595.0E-4614127IPR005559CG-1 DNA-binding domain
PfamPF018332.3E-10392475IPR002909IPT domain
CDDcd001020.00314392476No hitNo description
SuperFamilySSF812963.5E-17392476IPR014756Immunoglobulin E-set
Gene3DG3DSA:2.60.40.109.7E-9392481IPR013783Immunoglobulin-like fold
Gene3DG3DSA:1.25.40.202.4E-16580680IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484037.93E-17587682IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.945588680IPR020683Ankyrin repeat-containing domain
CDDcd002042.72E-14593680No hitNo description
PfamPF127961.6E-8594681IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008811.22621653IPR002110Ankyrin repeat
SMARTSM002485.2E-4621650IPR002110Ankyrin repeat
SMARTSM002483700660689IPR002110Ankyrin repeat
SMARTSM0001528738760IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.419739764IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525403.36E-6739845IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000154.5798820IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.584799828IPR000048IQ motif, EF-hand binding site
PfamPF006120.02801819IPR000048IQ motif, EF-hand binding site
SMARTSM000150.16821843IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.693823847IPR000048IQ motif, EF-hand binding site
PfamPF006124.5E-4824841IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 962 aa     Download sequence    Send to blast
MMQSGYDINH LVREAQTRWL KPVEVFLILQ NYEEHQLTHQ IPQKPPSGSL YLFNKQVLRF  60
FRKDGHRWRR RRDQRTIAEA HERLKVGNVE ALNCYYAHGE ENSNFQRRSY WMLDPKYEHI  120
VLVHYRDIGA GKQNAGSTSQ FSTFCSSAVN PSHNSLPTQQ PDSSFDIGES YELNHNQSSP  180
SSVEISSSQM KDPVPNHFDI IERTDEVSSS SVPDLSRALR RIEQQLSLND EEVEEMKTFY  240
VENEDSNDLE DVLCDYELSG QTPNVPDLLP EQSELGAKPK AAWGVLMGHD FKGDGVQQRH  300
QLPAVEVDIW NEVLYSSQKL PNLELQTKLG AEYAILSSLQ HVDSQKYHAY SSVPHAYGTT  360
QHYYSSLFDQ DGSGTSLESN ISLTCAQKQK FTIREISPDW CYSSEGAKII IIGSFLSDPS  420
ECAWACMIGD SEVPVQIIQE GVLCCHSPPH FQGKVNICIT SGNQESCSEV REFEYRAKPN  480
VCTHSNLPKT EVNKSSEELL LLVRFVQMLL SDLLPKGDVS RSRINLLGKS RMSEDSWSQI  540
IDSLLVGTST SSSTLDWLLQ ELLKDKLEVW LSCKLQKNNL RGCSLSKKEQ GIIHMAAGLG  600
LEWALKPVLN SGVSINFRDI NGWTALHWAA RFGREKMVAA LIASGASAGA VTDPNSQDPT  660
GKTAAAIAAT WGHMGLAGYL SEVALTSHLS SLTLEESELS KGSAAVEAER TVNSLSKESS  720
SSNEDQVFLK HTLAAVRNSA QAAARIQSAF RAHSFRKRQQ REAAVAIGDA VRDEYCILAH  780
NIRRISEASK LAFRNVRDYN SAALSIQKKY RGWKGRKDFL AFRQKVVKIQ AHVRGYQVRK  840
NSKVCWAVGI LDKVILRWRR RGVGLRGFRH DSESIDESED EDILKVFRKQ KVDAAIDEAV  900
SRVLSMVESP DARQQYHRIL EKYRQAKAEL ESAESDTASS SAPHISSYQG VLSHMENDEI  960
TS
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011071238.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071238.10.0calmodulin-binding transcription activator 4-like isoform X1
SwissprotQ9FYG20.0CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBLA0A2G9H1X50.0A0A2G9H1X5_9LAMI; Uncharacterized protein
STRINGMigut.E00009.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA39322037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.11e-163Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]