PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011071241.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MIKC_MADS
Protein Properties Length: 213aa    MW: 24311 Da    PI: 8.0291
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011071241.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.47e-27959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krie++s rqvtfskRr+g+lKKA+ELSvLCd +va++i+s +gkl+ +ss
  XP_011071241.1  9 KRIEDNSARQVTFSKRRKGLLKKAKELSVLCDLDVALLIISRHGKLHHFSS 59
                    79***********************************************96 PP
2K-box40.21.5e-141041713198
           K-box  31 LqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                     Lq   R l    +++Ls+ +L +Le++L+ +l++ R++K++lll++i+ l +kek+l ee+  L++k+
  XP_011071241.1 104 LQIVERDLEEPLVDQLSVTDLLHLENELQAALTQTRTTKTHLLLDSISSLHEKEKMLVEEKGVLEEKI 171
                     666666666666789***********************************************999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.254161IPR002100Transcription factor, MADS-box
SMARTSM004325.8E-35160IPR002100Transcription factor, MADS-box
CDDcd002651.37E-33279No hitNo description
SuperFamilySSF554551.09E-29278IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004047.3E-24323IPR002100Transcription factor, MADS-box
PfamPF003193.3E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004047.3E-242338IPR002100Transcription factor, MADS-box
PRINTSPR004047.3E-243859IPR002100Transcription factor, MADS-box
PROSITE profilePS512978.84887177IPR002487Transcription factor, K-box
PfamPF014861.3E-11113171IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009910Biological Processnegative regulation of flower development
GO:0010048Biological Processvernalization response
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MGRRKLEMKR IEDNSARQVT FSKRRKGLLK KAKELSVLCD LDVALLIISR HGKLHHFSSN  60
NSLTEILERY HSHIEAESSP STAVCESLVE CSKHSRSVSC GELLQIVERD LEEPLVDQLS  120
VTDLLHLENE LQAALTQTRT TKTHLLLDSI SSLHEKEKML VEEKGVLEEK IGGSMTSGRT  180
KKVILDLNII PDAQMLKERA PEQRKWRERR EPT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A6e-18188188MEF2 CHIMERA
6bz1_B6e-18188188MEF2 CHIMERA
6bz1_C6e-18188188MEF2 CHIMERA
6bz1_D6e-18188188MEF2 CHIMERA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1203210RKWRERRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011071241.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071241.11e-152agamous-like MADS-box protein AGL27 isoform X4
TrEMBLB2DCP71e-69B2DCP7_9LAMI; RIN-like MADS-box protein
STRINGXP_009795052.14e-70(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65060.12e-42MIKC_MADS family protein