PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011071244.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

TCP

Protein Properties

Length: 278aa MW: 29855.4 Da PI: 10.4351

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011071244.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	113.3	3.2e-35	55	140	2	87
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsss 87 a+k+++++++h kv+gR+RR+R++a+ aar+F+L++eLG+++d++ti+WLlqqa+p+i+++tgt++++as+ +a+ s+s++ ss XP_011071244.1 55 APKRSSNKDRHKKVEGRGRRIRIPALSAARIFQLTRELGHKTDGETIQWLLQQAEPSIIAATGTGTIPASAITAAGASVSEQGSSV 140 789******************************************************************88844444444443333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.1E-29	60	154	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	25.685	61	115	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MSPSSIKRPH FSALLMERKS SKHQQKIPQD VATSFSQKNM ALDKLEDDSK KRQLAPKRSS 60 NKDRHKKVEG RGRRIRIPAL SAARIFQLTR ELGHKTDGET IQWLLQQAEP SIIAATGTGT 120 IPASAITAAG ASVSEQGSSV SSGFYSRLGE TVPGVGLRPN LSMMGEDILG RSMGVWPSFS 180 GFGSGILQNS SVLSSNPVAN LSRVSKHGFQ AFEFPGSVSS GQMPGLELGL SQEGQIGGLN 240 LQTFTQFYQQ IGQTGDCGGS TNHQEQDHGK ENSQGSRQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269\|PubMed:12631321, ECO:0000269\|PubMed:16123132}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011071244.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011071244.1	0.0	transcription factor TCP20-like
Swissprot	Q9LSD5	4e-56	TCP20_ARATH; Transcription factor TCP20
TrEMBL	A0A2G9GCB7	1e-156	A0A2G9GCB7_9LAMI; Uncharacterized protein
STRING	XP_006484165.1	3e-82	(Citrus sinensis)
STRING	EOX99738	4e-82	(Theobroma cacao)
STRING	XP_006437974.1	3e-82	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA248	24	201

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27010.1	6e-55	TCP family protein

Publications ? help Back to Top
Zhu P, et al. Arabidopsis small nucleolar RNA monitors the efficient pre-rRNA processing during ribosome biogenesis. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(42): p. 11967-11972 [PMID:27708161] Wu JF, et al. LWD-TCP complex activates the morning gene CCA1 in Arabidopsis. Nat Commun, 2016. 7: p. 13181 [PMID:27734958] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Guan P Dancing with Hormones: A Current Perspective of Nitrate Signaling and Regulation in Arabidopsis. Front Plant Sci, 2017. 8: p. 1697 [PMID:29033968] Zhang N, et al. MOS1 functions closely with TCP transcription factors to modulate immunity and cell cycle in Arabidopsis. Plant J., 2018. 93(1): p. 66-78 [PMID:29086441] Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development. Plant Physiol., 2018. 176(2): p. 1694-1708 [PMID:29133375] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692]