PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011071256.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family CO-like
Protein Properties Length: 458aa    MW: 51592.8 Da    PI: 6.2085
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011071256.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box30.29.5e-102265340
        zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                    +r C+++ +k+++++C  ++ +lC++C ++ H+       H++v
  XP_011071256.1 22 ARACDNCVRKRARWYCAADDAFLCQSCDSSVHSAnplarrHERV 65
                    678*****************************667888888876 PP
2CCT67.82.9e-23399442144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++
  XP_011071256.1 399 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRS 442
                     9*****************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003367.5E-122067IPR000315B-box-type zinc finger
PROSITE profilePS5011911.2342067IPR000315B-box-type zinc finger
PfamPF006432.3E-82265IPR000315B-box-type zinc finger
CDDcd000213.00E-92367No hitNo description
PfamPF062036.2E-18399441IPR010402CCT domain
PROSITE profilePS5101716.083399441IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MQELKPMVSD RKLANAVGGK SARACDNCVR KRARWYCAAD DAFLCQSCDS SVHSANPLAR  60
RHERVRLKTA SISSFDDGSK AGLQISVPSW HQGFTRKART PRQKKPGKLI NNSEDPINRI  120
SHPLHLVPEI CSEEQSHEEN EEQLLYRVPI FDPFVAELCT SANSPEVLTT TFQINDEENK  180
RGFGHESKAA ANGFSQEMNH LQGFLPSDMD LAEFAADVES LLGKGLEDES FHMEELGLFD  240
CDEKGKELHD CSNLLPSGRV KVEDEDVAEL MAMGHENHHL DVEFDMGRET FELKFDYGSP  300
VACEEEDIKA QNEERIGWNS CFQECKMGDS SKTFLRLDYE GVLSAWDDKK SPWTTGERPN  360
LDSCDCWPDH CLGTSGAMHV YGEMGRMSGH AAAMADGGRE ARVSRYREKR RTRLFSKKIR  420
YEVRKLNAEK RPRMKGRFVK RSNFAPPAAA AAAANQKY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1409425RRTRLFSKKIRYEVRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011071256.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020547025.10.0zinc finger protein CONSTANS-LIKE 16-like
TrEMBLA0A2G9HYH30.0A0A2G9HYH3_9LAMI; Uncharacterized protein
STRINGVIT_01s0011g03520.t011e-178(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15392470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.17e-99B-box type zinc finger protein with CCT domain