PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011071308.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family Trihelix
Protein Properties Length: 401aa    MW: 45137.9 Da    PI: 6.3638
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011071308.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix83.52.7e-2679163286
        trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     W ++e+++Li +r+e++  ++++k++k+lW+ +s kmre+gf rsp++C++kw+nl k++kk k+++++++ + s +++y++++e
  XP_011071308.1  79 WVQEETRTLISLRKEIDMLFNTSKSNKHLWDNISLKMREKGFDRSPTMCTDKWRNLLKEFKKAKQNNQDGNGNGSAKMSYYKEIE 163
                     ***********************************************************************9***********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.3E-570140IPR009057Homeodomain-like
PROSITE profilePS500908.4971135IPR017877Myb-like domain
SMARTSM007173.2E-575137IPR001005SANT/Myb domain
CDDcd122034.41E-2677142No hitNo description
PfamPF138371.5E-1978165No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MYMSEKPQQQ QESAIDFYNS GKQEPPHQNN NMIIQLPSQP HHHLADGGAT TPSGGITATN  60
HNSSNPSSSS APKKRAETWV QEETRTLISL RKEIDMLFNT SKSNKHLWDN ISLKMREKGF  120
DRSPTMCTDK WRNLLKEFKK AKQNNQDGNG NGSAKMSYYK EIEEILRERS KNGPSWKNSE  180
ASNNAGGAGA SKVDSFMQFA DKGIDDTGLT FGPVEANGRS ALNLERRLDH DGHPLAITAA  240
DAVGASGVSP WNWRETPGSG EQTNTYDGRV ITVKLGDYTK RIGIDGSAEA IKEAIKSAFR  300
LRTRRAFWLE DEDNVVRSLD RDMPLGNYTL HVDEGLTIKV CFYEESDPLP VHTEDKTFYT  360
EDDFREFLSR RGWTCLREYN GYRNFDSMDE LCPGAIYRGS N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jmw_A7e-4273161186DNA binding protein GT-1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00640PBMTransfer from MDP0000164819Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011071308.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071308.10.0trihelix transcription factor GT-4-like
SwissprotQ9FX531e-169TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBLA0A2G9I9G90.0A0A2G9I9G9_9LAMI; Transcription factor GT-2
STRINGMigut.E00236.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51132136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25990.11e-168Trihelix family protein
Publications ? help Back to Top
  1. Le Gourrierec J,Li YF,Zhou DX
    Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex.
    Plant J., 1999. 18(6): p. 663-8
    [PMID:10417717]