PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011071649.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family GRAS
Protein Properties Length: 580aa    MW: 65501.2 Da    PI: 5.7954
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011071649.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2813.5e-862035731374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvsely.kalppsetseknsseelaalkl.fsevsPilkf 93 
                     lv+ Ll  A+ v++++ e+a++lL++   ++s++g+p+qRl+ yf+eAL +++ r++ +++ k +  +  ++++  ++++ +++ +++  P+ ++
  XP_011071649.1 203 LVQNLLLSADKVDEKKYECARKLLEECDRMSSSAGTPIQRLVLYFAEALYEKIDRETGSISpKGMGKRILHPREDLQHTNKFRIsLHKNQPLSQI 297
                     57899999***********************************************777777245566666666666666666666********** PP

            GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle 187
                     ++++  q++ e v+++++vH+iD++i  GlQ   L+q+La+R+ ++  +lRiT+vg     s+ ++e+tg++L  fAe+l+++f+f+++++ ++ 
  XP_011071649.1 298 AQFAGIQTVIEHVAEARKVHVIDLGIRSGLQCTILMQELAARQeRNVQHLRITAVGT---RSRPSIEQTGRQLMAFAESLNLNFSFHIVMVADIL 389
                     *******************************************66678*********...689******************************** PP

            GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282
                     dl+ + ++++ +Ea+aV +++ l+++  +  +le+    +++++ks++P v++v+e ea+ ns+ F++rf+eal +y a+fds+++ l +++ +r
  XP_011071649.1 390 DLNERLFELDADEAVAVYSAYTLMHMIGQADQLEH----IMRVIKSIRPCVMIVTELEANFNSPVFVRRFVEALFFYGAFFDSMAECLKNDEGNR 480
                     ***************************77666666....******************************************************** PP

            GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +  E  +++  i++vva+e+++r+ rh +l+ Wr+ + ++G+ +  l+ +   qa+l+ + ++ +   ++  + ++l++gWk+ pL +vSaW+
  XP_011071649.1 481 REAESICFSSTIRDVVAAEESKRKIRHVRLNVWRAFFARFGLAETDLGMSSLYQANLVRQGFPsGSSCTLGMNGKCLTIGWKRTPLCTVSAWK 573
                     ***************************************************************87889999*********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098537.918177552IPR005202Transcription factor GRAS
PfamPF035141.2E-83203573IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 580 aa     Download sequence    Send to blast
MLPSEQFDST RVQNESKGIQ NGVEEWDGTD ISLFSSNIGF FQAQGNAAEV GQALSENEIH  60
RQMQDFKEFC NLDDLYVDVV SPPFQSCDDN EIRTILGISS QSSEQTEVGQ EGSYVPLERY  120
FELLRRHQGK RLRSDGEKSN ADSQTQTTHS RSSMMSTEKI IELATENFIQ AISKSKEISV  180
VSHPYPSSMT LGYSTDDLKA IELVQNLLLS ADKVDEKKYE CARKLLEECD RMSSSAGTPI  240
QRLVLYFAEA LYEKIDRETG SISPKGMGKR ILHPREDLQH TNKFRISLHK NQPLSQIAQF  300
AGIQTVIEHV AEARKVHVID LGIRSGLQCT ILMQELAARQ ERNVQHLRIT AVGTRSRPSI  360
EQTGRQLMAF AESLNLNFSF HIVMVADILD LNERLFELDA DEAVAVYSAY TLMHMIGQAD  420
QLEHIMRVIK SIRPCVMIVT ELEANFNSPV FVRRFVEALF FYGAFFDSMA ECLKNDEGNR  480
REAESICFSS TIRDVVAAEE SKRKIRHVRL NVWRAFFARF GLAETDLGMS SLYQANLVRQ  540
GFPSGSSCTL GMNGKCLTIG WKRTPLCTVS AWKFLRDSDG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-412085738375GRAS family transcription factor containing protein, expressed
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011071649.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071649.10.0DELLA protein RGL1-like
TrEMBLA0A2G9I0D40.0A0A2G9I0D4_9LAMI; Uncharacterized protein
STRINGMigut.G00048.1.p1e-169(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34272149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.19e-53RGA-like 1