PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011071702.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

Dof

Protein Properties

Length: 496aa MW: 53022.6 Da PI: 5.5333

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011071702.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.7	1.5e-39	146	206	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s XP_011071702.1 146 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKSCQRYWTAGGTMRNVPVGAGRRKNKNSA 206 7899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	6.0E-31	131	203	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.1E-32	148	204	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.919	150	204	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	152	188	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 496 aa Download sequence Send to blast
MMKEPEIKLF GRKIFLPENG GGEYSGDSSG GSSDGSGGGI DCDSLEVSRG EQGEGDRGKD 60 GDGEERHGMA NDEEQAAGEL YETAALGEDQ NPGATDESHN ANALSESDDN SKTASIDDDV 120 GSENAPKADN DQSDATNAQQ KTLKKPDKIL PCPRCNSMDT KFCYYNNYNV NQPRHFCKSC 180 QRYWTAGGTM RNVPVGAGRR KNKNSASHCR HITISEALQA ARIDEPNGFH NLKLKPNGTI 240 LSFGPDSPLC ESMASALNLA EKRAPNGLRN GYYKIDQGGS VSGDKSDDQS IGSSITMSSS 300 SADGGKNGLP QPVMQNINGF PAPVPCMPGV PWPFPWNSAV PIPAICPPGY PLPYYPAPYW 360 NCSVPNAWNV PWLSVPPPTV NQKATGSGPS SPLGKHSRNG ELLRPKSSDG KEHSDAKSEE 420 SSVVVPKTLR IDDPKEAAKS SIWAALGIKY DSFSREGLFK ALQPKGDEKK QKVNTSALLQ 480 ANPAALSRSI SFQESA

Sequence ? help Back to Top

Protein Sequence Length: 496 aa Download sequence Send to blast

MMKEPEIKLF GRKIFLPENG GGEYSGDSSG GSSDGSGGGI DCDSLEVSRG EQGEGDRGKD  60
GDGEERHGMA NDEEQAAGEL YETAALGEDQ NPGATDESHN ANALSESDDN SKTASIDDDV  120
GSENAPKADN DQSDATNAQQ KTLKKPDKIL PCPRCNSMDT KFCYYNNYNV NQPRHFCKSC  180
QRYWTAGGTM RNVPVGAGRR KNKNSASHCR HITISEALQA ARIDEPNGFH NLKLKPNGTI  240
LSFGPDSPLC ESMASALNLA EKRAPNGLRN GYYKIDQGGS VSGDKSDDQS IGSSITMSSS  300
SADGGKNGLP QPVMQNINGF PAPVPCMPGV PWPFPWNSAV PIPAICPPGY PLPYYPAPYW  360
NCSVPNAWNV PWLSVPPPTV NQKATGSGPS SPLGKHSRNG ELLRPKSSDG KEHSDAKSEE  420
SSVVVPKTLR IDDPKEAAKS SIWAALGIKY DSFSREGLFK ALQPKGDEKK QKVNTSALLQ  480
ANPAALSRSI SFQESA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011071702.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011071702.1	0.0	cyclic dof factor 3-like
TrEMBL	A0A2G9GJU7	0.0	A0A2G9GJU7_9LAMI; Uncharacterized protein
STRING	PGSC0003DMT400050273	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA532	24	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	6e-82	cycling DOF factor 2