PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011071772.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

MYB_related

Protein Properties

Length: 307aa MW: 32874.9 Da PI: 9.7249

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011071772.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	41.3	3.5e-13	96	140	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + ++ G g+W+ I+r k+Rt+ q+ s+ qky XP_011071772.1 96 PWTEEEHKLFLIGLQKVGRGDWRGISRNYVKTRTPTQVASHAQKY 140 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	18.374	89	145	IPR017930	Myb domain
SuperFamily	SSF46689	5.61E-17	91	146	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	9.7E-17	92	143	IPR006447	Myb domain, plants
SMART	SM00717	1.1E-8	93	143	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.0E-10	95	140	IPR009057	Homeodomain-like
Pfam	PF00249	2.0E-10	96	140	IPR001005	SANT/Myb domain
CDD	cd00167	8.69E-9	96	141	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
MSQSSEATSA AVGGGGGGGE IMLFGVRVKV DPMRTSVSMN NLSEYEPVNT TGNPKISGNE 60 VPKAVAEDGG TAGYASADDA VPQPSNGNRE RKRGVPWTEE EHKLFLIGLQ KVGRGDWRGI 120 SRNYVKTRTP TQVASHAQKY FLRRSNLNRR RRRSSLFDIT TDSVAAMPVE EGKNHQESAA 180 QSVAPPTTLP LPITSNVNGF SVVPFPVNIG PVLFSVQNGN PMENSTLGQS DLPNNSSSML 240 VRPVPIVPMP ASSTMVDLNL KQQSPIEPSL LSLRLSLSSG QDQPSTRDSA FQMLPSFKNG 300 DSIITVA

Functional Description ? help Back to Top
Source	Description
UniProt	Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269\|PubMed:21030505}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00631	PBM	Transfer from PK23829.1	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011071772.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269\|PubMed:21030505}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011071772.1	0.0	transcription factor MYB1R1
Swissprot	Q2V9B0	2e-94	MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBL	A0A2G9GK84	1e-137	A0A2G9GK84_9LAMI; Uncharacterized protein
STRING	Migut.D01891.1.p	3e-99	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2574	23	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74840.2	4e-58	MYB_related family protein

Publications ? help Back to Top
Shin D, et al. Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance. Plant Physiol., 2011. 155(1): p. 421-32 [PMID:21030505]