PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011071972.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MIKC_MADS
Protein Properties Length: 210aa    MW: 24222.1 Da    PI: 9.8448
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011071972.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF94.35.4e-30959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien + rqvtfskRr g+lKKA+ELSvLCdaeva+iifs++gkl+e+ss
  XP_011071972.1  9 KRIENATSRQVTFSKRRSGLLKKAFELSVLCDAEVALIIFSPKGKLHEFSS 59
                    79***********************************************96 PP
2K-box73.18e-2583173999
           K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                       e++ + l++e a L k+ie L+ ++R+llGe+L+s+s  eL+++e+qLe+sl++iR++Kn l++eqi++l+++ek+l +en +Lrkk e
  XP_011071972.1  83 SVEENLQLLKEETATLYKKIELLEDSKRKLLGENLDSCSTDELEEVEKQLERSLSNIRARKNLLFKEQIDQLKEQEKNLTKENIELRKKSE 173
                     567889**********************************************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.595161IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-30323IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.72E-32376IPR002100Transcription factor, MADS-box
CDDcd002653.10E-40375No hitNo description
PfamPF003191.8E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-303859IPR002100Transcription factor, MADS-box
PfamPF014861.6E-2386172IPR002487Transcription factor, K-box
PROSITE profilePS5129714.81188178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MVRGKTELKR IENATSRQVT FSKRRSGLLK KAFELSVLCD AEVALIIFSP KGKLHEFSSS  60
SMINNTIERY RKNTKTLAFG RNSVEENLQL LKEETATLYK KIELLEDSKR KLLGENLDSC  120
STDELEEVEK QLERSLSNIR ARKNLLFKEQ IDQLKEQEKN LTKENIELRK KSEMLPLKLS  180
TLPKVQLLPQ LMEVETALFI GLPEPRTTNV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-17162162MEF2C
5f28_B3e-17162162MEF2C
5f28_C3e-17162162MEF2C
5f28_D3e-17162162MEF2C
6byy_A5e-17162162MEF2 CHIMERA
6byy_B5e-17162162MEF2 CHIMERA
6byy_C5e-17162162MEF2 CHIMERA
6byy_D5e-17162162MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that promotes flowering, especially in response to vernalization by short periods of cold, in an FLC-inpedendent manner. {ECO:0000269|PubMed:16778081}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011071972.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Maintained at very low levels by the polycomb-group (PcG) proteins MSI1, CLF, and EMF2 via histone methylation (H3K27me3). Derepressed upon cold treatment (vernalization). {ECO:0000269|PubMed:16778081}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071972.11e-147agamous-like MADS-box protein AGL19
SwissprotO827438e-72AGL19_ARATH; Agamous-like MADS-box protein AGL19
TrEMBLA9YTS52e-94A9YTS5_9LAMI; SOC1-like protein 2
STRINGMigut.A00897.1.p6e-91(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22950.13e-74AGAMOUS-like 19
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Suter L,Rüegg M,Zemp N,Hennig L,Widmer A
    Gene regulatory variation mediates flowering responses to vernalization along an altitudinal gradient in Arabidopsis.
    Plant Physiol., 2014. 166(4): p. 1928-42
    [PMID:25339407]