PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011072032.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family TALE
Protein Properties Length: 295aa    MW: 33360.7 Da    PI: 6.7066
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011072032.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.35.3e-082442772154
                     HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     k +yp+++++++L +++gL+ +q+ +WF N+R +
  XP_011072032.1 244 KWPYPTEDDKAKLVEQTGLQLKQINNWFINQRKR 277
                     469*****************************87 PP
2ELK25.53.1e-09198219122
             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                     ELK +L++++++++ ++++E++
  XP_011072032.1 198 ELKIELKQGFKSRIEDVREEIL 219
                     9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.2E-183276IPR005540KNOX1
PfamPF037903.9E-173475IPR005540KNOX1
SMARTSM012567.9E-2687142IPR005541KNOX2
PfamPF037914.5E-1991141IPR005541KNOX2
PROSITE profilePS512139.132198218IPR005539ELK domain
PROSITE profilePS5007111.677218281IPR001356Homeobox domain
SuperFamilySSF466892.74E-16220285IPR009057Homeodomain-like
SMARTSM003891.6E-10220285IPR001356Homeobox domain
CDDcd000864.11E-11221282No hitNo description
Gene3DG3DSA:1.10.10.604.3E-25225284IPR009057Homeodomain-like
PfamPF059201.2E-17238277IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010192Biological Processmucilage biosynthetic process
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MQEQGISMMG SGGIGGISAN DVSVAVSGEL HHQLKSEIAT HPLYEQLLSA HVACLRVATP  60
IDQLPLIDAQ LSQSHHILRT YAQNATHSLP PHERQELDNF LAQYLLVLCS FREQLQQHVR  120
VHAVEAVMAC REIEQNLQSL TGATLGEGTG ATMSDDEDEL QMDFSLDQSG ADGHDLMGFG  180
PLLPTESERS LMERVRQELK IELKQGFKSR IEDVREEILR KRRAGKLPGD TTTVLKNWWQ  240
QHSKWPYPTE DDKAKLVEQT GLQLKQINNW FINQRKRNWH SNSQSATSLK SKRKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A6e-13221277864Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1274294RKRNWHSNSQSATSLKSKRKR
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in secondary cell wall biosynthesis. {ECO:0000269|PubMed:15980264}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011072032.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011072032.10.0homeobox protein HD1
SwissprotQ9FPQ81e-172KNAT7_ARATH; Homeobox protein knotted-1-like 7
TrEMBLA0A4D8Y4D60.0A0A4D8Y4D6_SALSN; Uncharacterized protein
STRINGXP_008437194.10.0(Cucumis melo)
STRINGXP_004143939.10.0(Cucumis sativus)
STRINGXP_004159970.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67732329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62990.11e-160KNOTTED-like homeobox of Arabidopsis thaliana 7
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. He JB, et al.
    KNAT7 positively regulates xylan biosynthesis by directly activating IRX9 expression in Arabidopsis.
    J Integr Plant Biol, 2018. 60(6): p. 514-528
    [PMID:29393579]