PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011072116.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family bHLH
Protein Properties Length: 187aa    MW: 20642.7 Da    PI: 10.7271
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011072116.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.82.6e-101668454
                    HHHHHHHHHHHHHHHHHHHHHCTSCC.C....TTS-STCHHHHHHHHHHHHHH CS
             HLH  4 ahnerErrRRdriNsafeeLrellPk.as.kapskKlsKaeiLekAveYIksL 54
                      +++E++RR ++++   +L +l+P+  s  a ++ l+  + Le+A  YI++L
  XP_011072116.1 16 ERKIIEKNRRIQMKDLCLKLVSLIPPqHSrPAEKENLTQQDQLEQAASYIQQL 68
                    5789**********************5554445555****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.31E-9479IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.4551268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-81481IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-71668IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00641874IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MKNESGTSSS AGSKVERKII EKNRRIQMKD LCLKLVSLIP PQHSRPAEKE NLTQQDQLEQ  60
AASYIQQLSA RVEEMRRRKA QALAAAAAAA NASTKRGPPS TSRLVSPVLK FRVFGQSLEV  120
VLISGLTRNF SLHKVVSILE DEGAEVNTVN LSTIGDKVFH TIHAQVKVSR VGMDTSRMSE  180
RLHELIS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011072116.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011072116.11e-134uncharacterized protein LOC105157401
TrEMBLA0A2N9FLY01e-60A0A2N9FLY0_FAGSY; Uncharacterized protein
STRINGPOPTR_0015s08580.17e-60(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA60831423
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.13e-22bHLH family protein