PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011072206.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

TCP

Protein Properties

Length: 217aa MW: 22729.4 Da PI: 10.309

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011072206.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	124.1	1.5e-38	42	143	3	89
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg....... 88 kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ +++s ++s+s s++ XP_011072206.1 42 LKKPPAKDRHSKVDGRGRRIRMPLICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFStvSPSSARNSTS--SISaaldhkp 134 699************************************************************99999888555555555554..3332344444 PP TCP 89 ........k 89 + XP_011072206.1 135 lsnshsllA 143 444444440 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.3E-34	47	154	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.946	47	101	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MSTSAAAEGA NPSSAPGPLS DPSQRHHQLH PSPTTNSTSL PLKKPPAKDR HSKVDGRGRR 60 IRMPLICAAR VFQLTRELGH KSDGQTIEWL LRQAEPSIIA ATGTGTTPAS FSTVSPSSAR 120 NSTSSISAAL DHKPLSNSHS LLAPTPFILG KRLRSDDDDH HQQLSNSKDD VTAGSPTVGP 180 TVAAGGFWAL PARPDFGQVW SFAAPPPEMM GAAAAAP

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00524	DAP	Transfer from AT5G23280	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011072206.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011072206.1	1e-155	transcription factor TCP7
Swissprot	Q9FMX2	3e-72	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A4D8ZI28	1e-97	A0A4D8ZI28_SALSN; Transcription factor TCP21 (Protein CCA1 HIKING EXPEDITION)
STRING	Solyc04g009180.1.1	6e-79	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3951	22	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	8e-54	TCP family protein