PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011072458.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family bHLH
Protein Properties Length: 406aa    MW: 45494.3 Da    PI: 6.7658
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011072458.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.45.1e-08310350954
                     HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      r+RR+ri +++  L++l+P        K++ a++L +A +Y+k L
  XP_011072458.1 310 ARQRRERISERIRVLQKLVPGG-----SKMDTASMLDEAANYLKFL 350
                     69******************95.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.939301350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.67E-14307361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-13307356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-12309360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-5310350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.25E-4323355No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MDGLDWSNQQ DDLEESLMNI PGSDKMQMMS KDHGFNPVHL IQTPHDAVFP NVLPQWNSRS  60
EGVNSWGSVA ITAEMLHSNS FDDNNTLNNI SQQNGLILDS GMKKPVVSTN TAGSLESLDC  120
LLSASNSQTD TTSVEDDGIS MIFSDCKSLW SYKSVPSAIL RPEETTKRFG KDSDTDVSHD  180
NQSVQNHHHH PINFSKRKRA ESHQQQNLDF HHPNYNYSAT TDHHQGSSSS SFQRKPKKPR  240
LDSSSNINFQ QPSSSTSSSA DEPDAEAIAQ MKEMIYRAAA FRPVNFGLET VEKPKRKNVR  300
ISNDPQTVAA RQRRERISER IRVLQKLVPG GSKMDTASML DEAANYLKFL RSQVKALEAL  360
GQKIDDHTVL VNNANLGFSP FLNYSLNFPM HHQPQFSIQN PNQSKN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1310315RQRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011072458.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150421e-49AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011072458.10.0transcription factor bHLH87 isoform X1
TrEMBLA0A2G9IB311e-105A0A2G9IB31_9LAMI; Uncharacterized protein
STRINGXP_010267082.11e-86(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43502242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.12e-67bHLH family protein