PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011072882.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

TCP

Protein Properties

Length: 310aa MW: 35087.1 Da PI: 10.0781

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011072882.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	88.7	1.3e-27	45	131	2	88
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg 88 g+kdrhsk++T +g+RdRR+Rls+++a +++dLq++LG+ ++sk ++WLl + k+ i++l+ ++ ++a ++ +++ + ++ + XP_011072882.1 45 SGGKDRHSKVYTLRGLRDRRIRLSVPTALQLYDLQEKLGLNQPSKVVDWLLDATKHDIDKLPPLPVIPAVNFaqSHQPTALTF--HHDQ 131 689*************************************************************8888833312111111111..1111 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.4E-23	46	118	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.404	47	105	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MRDFRSKNEG ENEYNKFPKI NTTSTSRPQW SRFRNPRIFR VSSASGGKDR HSKVYTLRGL 60 RDRRIRLSVP TALQLYDLQE KLGLNQPSKV VDWLLDATKH DIDKLPPLPV IPAVNFAQSH 120 QPTALTFHHD QSAAKELVMK MNVERGKNKW IAQENEEGFG GFMAQLSAHN FFPLSNHSTL 180 PTMPYNSSDL NWDSAQNLSL SQFGGGFSFS AQTQENSHSE SNLSSVLPSS SQLFFPSVFP 240 PFSSYIGTPS VENDCHFRHL HHLQNVQQNS PMPTSTLRFI TSPMKSFSLN ADDKSVSSQE 300 NGTRKDRRNS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	2e-18	52	106	1	55	Putative transcription factor PCF6
5zkt_B	2e-18	52	106	1	55	Putative transcription factor PCF6

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011072882.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011072882.1	0.0	transcription factor TCP17-like
TrEMBL	A0A438I3C8	6e-72	A0A438I3C8_VITVI; Transcription factor TCP5
STRING	EOY22094	2e-60	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA821	24	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02150.1	4e-41	plastid transcription factor 1