PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011072925.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C3H
Protein Properties Length: 529aa    MW: 58384 Da    PI: 5.0896
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011072925.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH361.2e-11219242427
                     ---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                     e C +++++G Ck+G +CkF+H+p
  XP_011072925.1 219 EDCAYYMKFGSCKFGLNCKFNHPP 242
                     89********************97 PP
2zf-CCCH26.61e-08265288326
                     S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                     + +C++++ +G C+yG  C+++Hg
  XP_011072925.1 265 QTECKYYLTSGGCRYGKDCNYSHG 288
                     679********************8 PP
3zf-CCCH41.13e-13310335227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++C++++rtG CkyG++C+F+H++
  XP_011072925.1 310 GEKECPYYMRTGSCKYGANCRFHHPE 335
                     7899********************96 PP
4zf-CCCH28.33e-09446472127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +++++C ff++tG Ck+ ++CkF+H++
  XP_011072925.1 446 PGEPECTFFLKTGDCKFKSNCKFHHPK 472
                     5799*********************96 PP
5zf-CCCH19.71.6e-06495512219
                     -S---SGGGGTS--TTTT CS
         zf-CCCH   2 ktelCrffartGtCkyGd 19 
                     ++++C +++r+G+Ck+G+
  XP_011072925.1 495 DQPICTHYHRYGICKFGP 512
                     689**************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.7E-5214243IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-4215242IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.633215243IPR000571Zinc finger, CCCH-type
PfamPF006424.8E-9219242IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.84262290IPR000571Zinc finger, CCCH-type
SMARTSM003568.6E-5262289IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-6264291IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-6265288IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-5268289IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.502308336IPR000571Zinc finger, CCCH-type
SMARTSM003563.2E-7308335IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.89E-7310336IPR000571Zinc finger, CCCH-type
PfamPF006429.0E-11310335IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.6E-6314334IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.249445473IPR000571Zinc finger, CCCH-type
SMARTSM003563.0E-4445472IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-6447472IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-5449473IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.465493513IPR000571Zinc finger, CCCH-type
SMARTSM0035629493514IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MAESPVSSST SDKPPIEKQG LGLLISHTPP SDPITSDQDI KFQPSSCSSQ NASDAGNASP  60
TEGAADGVLK EIGTAFQEEE LGNSIQRELL QLTVVQAEIE AVCEKLEAIH VTEARSDVEV  120
VKKDIDEEKD GKDAEPVDKE NEGGEDRNDA RMTKSDHIDE DKDDKDAESV EEENQNEEGD  180
DEDEGNVDGQ SGQAVTMLGR HNNSNHRRRT NYPMRPDAED CAYYMKFGSC KFGLNCKFNH  240
PPRRKNQGVK EKAMNREENF EKTGQTECKY YLTSGGCRYG KDCNYSHGSD KSSTSHIPEY  300
NFLGLPIRPG EKECPYYMRT GSCKYGANCR FHHPEPKTVA GGGSPSGYGN DRSLPSQVVS  360
SSSLSPWSAS GAFTSTSPFV PVIYPPTQGA PRPNPEWNGY QGTAYPTSER SLPTPPAFAM  420
NNLPTEINFP SQHQHDMAVQ EHPERPGEPE CTFFLKTGDC KFKSNCKFHH PKNRNPKPKA  480
NTFALNDKGL PLRPDQPICT HYHRYGICKF GPAYEAEKSG HGNETESSI
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011072925.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011072925.10.0zinc finger CCCH domain-containing protein 67 isoform X2
TrEMBLA0A2G9I3H60.0A0A2G9I3H6_9LAMI; CCCH-type Zn-finger protein
STRINGMigut.I00264.1.p0.0(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.11e-111C3H family protein