PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011072977.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

C2H2

Protein Properties

Length: 272aa MW: 31615.4 Da PI: 9.2175

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011072977.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.6	0.00041	106	129	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C++C+k F+ +L +H + H XP_011072977.1 106 WRCGYCKKIFRAEKYLDQHFDNrH 129 58*****************77666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	108	129	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
MGETRGCAVY SIFLLWMTLQ LCCATSSPSQ SQTNQGTDVA APREEQTEVH CSRERSRAAW 60 KIIEEYLMPF MEKQKYQLSS QCRLHPSNDI FRDQEKHKSH IDINEWRCGY CKKIFRAEKY 120 LDQHFDNRHY NLLNVSHGKC LADLCGALHC DFVMNSQSLK TKCNPAAAAR NRHLCENLAD 180 SCFPINEGPS ATRLHEFFLR QFCDAHTCSR ARKPFSRGGR KRTSVFYLAI SVLVLMFLPL 240 FYLIVYLYQR EMKTQTTQLK RISKHGRKPK PS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011072977.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011072977.1	0.0	uncharacterized protein LOC105158054
TrEMBL	A0A4D8ZKG3	1e-141	A0A4D8ZKG3_SALSN; Uncharacterized protein
STRING	Migut.I00466.1.p	1e-152	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8084	12	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63280.1	1e-112	C2H2-like zinc finger protein