PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011073024.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family Trihelix
Protein Properties Length: 878aa    MW: 97502.3 Da    PI: 9.115
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011073024.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix59.21.1e-18786866186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +W+ +ev++Li++r ++++r++  k +++lWee+s+ +   g+ rsp qCk+ w +l ++y++ k+  k+     ++++pyf++l+
  XP_011073024.1 786 KWKPEEVRKLIKLRGKLHSRFQVLKGRMALWEEISSSLLLDGIGRSPGQCKSLWASLVQKYEESKRDTKS-----QKSWPYFEDLD 866
                     7****************************************************************99998.....356******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.60.15.106.2E-6777327IPR001279Metallo-beta-lactamase
SuperFamilySSF562811.32E-7178492IPR001279Metallo-beta-lactamase
SMARTSM008491.3E-2490287IPR001279Metallo-beta-lactamase
PfamPF127062.5E-10102237IPR001279Metallo-beta-lactamase
PfamPF075211.0E-6435464IPR011108Zn-dependent metallo-hydrolase, RNA specificity domain
PROSITE profilePS500908.2779843IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.2E-6779845IPR009057Homeodomain-like
PfamPF138373.9E-17784868No hitNo description
CDDcd122036.52E-20785850No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009658Biological Processchloroplast organization
GO:0009942Biological Processlongitudinal axis specification
GO:0060918Biological Processauxin transport
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 878 aa     Download sequence    Send to blast
MAALNAISVC PHKLFWCQPK PRKRFISCCV STPSVKGSRG SKVPRRRSGR TEGAGKSMED  60
SVKRKMEQFY EGSDGPPLRI LPIGGLGEIG MNCMLVGNFD RYILIDAGVM FPDYDELGVQ  120
KIIPDTTFIK KWSHKIEAVI ITHGHEDHIG ALPWVIPALD SHTPIFASSF TMELIKKRLK  180
EFGIFVPSRL KVFKTRRRFV AGPFEVEPIR VTHSIPDCSG LVFRCADGTI FHTGDWKIDE  240
SPLDGKVFDR EALEELSKEG VTLMMSDSTN VLSPGRTLSE TVVADSLLRH ISAAKGRVIT  300
TQFASNIHRL GSVKAAADLT GRKLVFVGMS LRTYLDAAWK DGKAPIDPST LVKVEDIDAY  360
APKDLLIVTT GSQAEPRAAL NLASYGSSHS LKLNKEDLIL YSAKVIPGNE TRVMKMLNRV  420
SEIGSTIVMG KNELLHTSGH AHREELDEVL KIVKPQHFLP IHGELLFLKE HELLGKSTGI  480
RHTAVIKNGE MLGVSHLRNR RVLSNGFISL GKENLQLMYS DGDKAFGTAT ELCVDERMRI  540
ASDGIIVVSM EILRPQAADG SVEKALKGKI RITTRCLWLD KGKLLDALHK AAHAALSSCP  600
VNCPLAHMER TVAEVLRKMV RKYSSKRPEV IAIATENPAG VLADEINRKL SGKPHISSEM  660
SVLRKAVDGH EKARLPINIL EDGNGLAIER DTTAQELEDH DYEEQVQHEE VIVSNSKLPD  720
KAPNVDESDD FWKSFISPSG LKQSEGDSDL LPAAAHREKA KEESSELDSV LPKSRQTTSK  780
TAKRNKWKPE EVRKLIKLRG KLHSRFQVLK GRMALWEEIS SSLLLDGIGR SPGQCKSLWA  840
SLVQKYEESK RDTKSQKSWP YFEDLDKILS NLETNASK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5a0t_A4e-857863619560RIBONUCLEASE J
5a0t_B4e-857863619560RIBONUCLEASE J
5a0v_A4e-857863619560RIBONUCLEASE J
5a0v_B4e-857863619560RIBONUCLEASE J
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein required during embryogenesis, especially in initiating and maintaining the organization of shoot apical meristems (SAMs), cotyledons, and hypocotyls (PubMed:15266054, PubMed:25871650). Involved in auxin-mediated pathways during embryogenesis (PubMed:25871650). RNase that has both endonuclease and 5'-3' exonuclease activities. Involved in RNA surveillance to prevent overaccumulation of antisense RNA (PubMed:22033332). Probably involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay (By similarity). {ECO:0000250|UniProtKB:Q72JJ7, ECO:0000269|PubMed:15266054, ECO:0000269|PubMed:22033332, ECO:0000269|PubMed:25871650}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011073024.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:25871650}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011073024.10.0uncharacterized protein LOC105158090 isoform X1
SwissprotQ84W560.0RNJ_ARATH; Ribonuclease J
TrEMBLA0A4D8YXA30.0A0A4D8YXA3_SALSN; Ribonuclease J
STRINGMigut.I00512.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA58742331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63420.10.0Trihelix family protein
Publications ? help Back to Top
  1. Bryant N,Lloyd J,Sweeney C,Myouga F,Meinke D
    Identification of nuclear genes encoding chloroplast-localized proteins required for embryo development in Arabidopsis.
    Plant Physiol., 2011. 155(4): p. 1678-89
    [PMID:21139083]
  2. Halpert M,Liveanu V,Glaser F,Schuster G
    The Arabidopsis chloroplast RNase J displays both exo- and robust endonucleolytic activities.
    Plant Mol. Biol., 2019. 99(1-2): p. 17-29
    [PMID:30511330]