PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011073027.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family Trihelix
Protein Properties Length: 729aa    MW: 80940 Da    PI: 9.0518
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011073027.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix59.58.3e-19637717186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +W+ +ev++Li++r ++++r++  k +++lWee+s+ +   g+ rsp qCk+ w +l ++y++ k+  k+     ++++pyf++l+
  XP_011073027.1 637 KWKPEEVRKLIKLRGKLHSRFQVLKGRMALWEEISSSLLLDGIGRSPGQCKSLWASLVQKYEESKRDTKS-----QKSWPYFEDLD 717
                     7****************************************************************99998.....356******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.60.15.103.2E-367178IPR001279Metallo-beta-lactamase
SuperFamilySSF562811.32E-4413343IPR001279Metallo-beta-lactamase
PfamPF075218.0E-7286315IPR011108Zn-dependent metallo-hydrolase, RNA specificity domain
PROSITE profilePS500908.2630694IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.5E-6630696IPR009057Homeodomain-like
PfamPF138373.0E-17635719No hitNo description
CDDcd122036.60E-20636701No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009658Biological Processchloroplast organization
GO:0009942Biological Processlongitudinal axis specification
GO:0060918Biological Processauxin transport
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 729 aa     Download sequence    Send to blast
MKTTLVIPAL DSHTPIFASS FTMELIKKRL KEFGIFVPSR LKVFKTRRRF VAGPFEVEPI  60
RVTHSIPDCS GLVFRCADGT IFHTGDWKID ESPLDGKVFD REALEELSKE GVTLMMSDST  120
NVLSPGRTLS ETVVADSLLR HISAAKGRVI TTQFASNIHR LGSVKAAADL TGRKLVFVGM  180
SLRTYLDAAW KDGKAPIDPS TLVKVEDIDA YAPKDLLIVT TGSQAEPRAA LNLASYGSSH  240
SLKLNKEDLI LYSAKVIPGN ETRVMKMLNR VSEIGSTIVM GKNELLHTSG HAHREELDEV  300
LKIVKPQHFL PIHGELLFLK EHELLGKSTG IRHTAVIKNG EMLGVSHLRN RRVLSNGFIS  360
LGKENLQLMY SDGDKAFGTA TELCVDERMR IASDGIIVVS MEILRPQAAD GSVEKALKGK  420
IRITTRCLWL DKGKLLDALH KAAHAALSSC PVNCPLAHME RTVAEVLRKM VRKYSSKRPE  480
VIAIATENPA GVLADEINRK LSGKPHISSE MSVLRKAVDG HEKARLPINI LEDGNGLAIE  540
RDTTAQELED HDYEEQVQHE EVIVSNSKLP DKAPNVDESD DFWKSFISPS GLKQSEGDSD  600
LLPAAAHREK AKEESSELDS VLPKSRQTTS KTAKRNKWKP EEVRKLIKLR GKLHSRFQVL  660
KGRMALWEEI SSSLLLDGIG RSPGQCKSLW ASLVQKYEES KRDTKSQKSW PYFEDLDKIL  720
SNLETNASK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5a0t_A6e-6015487104560RIBONUCLEASE J
5a0t_B6e-6015487104560RIBONUCLEASE J
5a0v_A6e-6015487104560RIBONUCLEASE J
5a0v_B6e-6015487104560RIBONUCLEASE J
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein required during embryogenesis, especially in initiating and maintaining the organization of shoot apical meristems (SAMs), cotyledons, and hypocotyls (PubMed:15266054, PubMed:25871650). Involved in auxin-mediated pathways during embryogenesis (PubMed:25871650). RNase that has both endonuclease and 5'-3' exonuclease activities. Involved in RNA surveillance to prevent overaccumulation of antisense RNA (PubMed:22033332). Probably involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay (By similarity). {ECO:0000250|UniProtKB:Q72JJ7, ECO:0000269|PubMed:15266054, ECO:0000269|PubMed:22033332, ECO:0000269|PubMed:25871650}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011073027.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:25871650}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011073027.20.0uncharacterized protein LOC105158090 isoform X3
SwissprotQ84W560.0RNJ_ARATH; Ribonuclease J
TrEMBLA0A4D8YXA30.0A0A4D8YXA3_SALSN; Ribonuclease J
STRINGMigut.I00512.1.p0.0(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63420.10.0Trihelix family protein
Publications ? help Back to Top
  1. Bryant N,Lloyd J,Sweeney C,Myouga F,Meinke D
    Identification of nuclear genes encoding chloroplast-localized proteins required for embryo development in Arabidopsis.
    Plant Physiol., 2011. 155(4): p. 1678-89
    [PMID:21139083]
  2. Halpert M,Liveanu V,Glaser F,Schuster G
    The Arabidopsis chloroplast RNase J displays both exo- and robust endonucleolytic activities.
    Plant Mol. Biol., 2019. 99(1-2): p. 17-29
    [PMID:30511330]