PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011073080.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MIKC_MADS
Protein Properties Length: 196aa    MW: 22668.1 Da    PI: 10.4434
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011073080.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.61.6e-28959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien +nrqvtfskRrng+lKKA+ELSvLCdaeva++ifs++gk + +ss
  XP_011073080.1  9 KRIENATNRQVTFSKRRNGLLKKAFELSVLCDAEVALLIFSPSGKAFQFSS 59
                    79********************************************99986 PP
2K-box75.51.4e-2578171699
           K-box   6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                     ++++  +++e +++e++ +k+ ++ L+   + l Ge+L+ L +keL+qLe+qL  ++++iRskK ++++++i++l+++ k+lqeen++L+kk++
  XP_011073080.1  78 SNDQGITTMEVWRNEIEDMKRTVDDLEARDKYLSGENLSGLGMKELKQLERQLRIGVERIRSKKRRMIMDHINYLKRRHKDLQEENNNLQKKVK 171
                     5557778899*****************999*************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.2E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.324161IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.22E-32279IPR002100Transcription factor, MADS-box
CDDcd002651.31E-39270No hitNo description
PRINTSPR004041.1E-30323IPR002100Transcription factor, MADS-box
PfamPF003193.2E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-303859IPR002100Transcription factor, MADS-box
PfamPF014862.5E-2384170IPR002487Transcription factor, K-box
PROSITE profilePS5129714.27386178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MGRGKVELKR IENATNRQVT FSKRRNGLLK KAFELSVLCD AEVALLIFSP SGKAFQFSSH  60
DMQRSIARYK SEVGMTKSND QGITTMEVWR NEIEDMKRTV DDLEARDKYL SGENLSGLGM  120
KELKQLERQL RIGVERIRSK KRRMIMDHIN YLKRRHKDLQ EENNNLQKKV KLHELGEANV  180
TSAIISESNA ATLFHM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A4e-23187189MEF2 CHIMERA
6byy_B4e-23187189MEF2 CHIMERA
6byy_C4e-23187189MEF2 CHIMERA
6byy_D4e-23187189MEF2 CHIMERA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011073080.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011073080.11e-143MADS-box transcription factor 23 isoform X1
TrEMBLQ711P21e-112Q711P2_ANTMA; Putative MADS-domain transcription factor DEFH7 (Fragment)
STRINGMigut.D01274.1.p1e-106(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42830.27e-50MIKC_MADS family protein