PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011073164.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

ZF-HD

Protein Properties

Length: 172aa MW: 19005.1 Da PI: 8.1419

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011073164.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	88.8	5.2e-28	9	61	5	59
ZF-HD_dimer 5 rYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 Y+eCl+NhAaslG++a+DGCgEf+ + +++ +l+CaACgCHRnFHR+ + XP_011073164.1 9 IYRECLRNHAASLGSYATDGCGEFTLD--DTAPGGGLNCAACGCHRNFHRKVIRS 61 7***********************8..4456799*************8765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	4.8E-23	9	58	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	3.0E-17	10	57	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	2.1E-22	10	57	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	22.34	10	58	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	5.6E-17	87	157	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	8.6E-29	90	157	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	5.5E-30	99	157	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence Send to blast
MEGDSSNDIY RECLRNHAAS LGSYATDGCG EFTLDDTAPG GGLNCAACGC HRNFHRKVIR 60 SQTHDAAADV IVDYASGGSG RQQVTGMAYS PESSERGSKK RFRTKFTAEQ KEKMLGFAEK 120 LGWKLQRKDE EDEIERFCRG VGISRKVFKV WMHNHKNSPP HSAGNVSSLT DQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	5e-23	98	162	16	79	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Essential protein. Putative transcription factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011073164.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011073164.1	1e-128	zinc-finger homeodomain protein 7-like
Swissprot	Q9SB61	4e-40	ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBL	A0A2G9FYN7	1e-98	A0A2G9FYN7_9LAMI; Uncharacterized protein
STRING	Migut.I00573.1.p	1e-81	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11865	20	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	2e-42	homeobox protein 22

Publications ? help Back to Top
Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA Seed tolerance to deterioration in arabidopsis is affected by virus infection. Plant Physiol. Biochem., 2017. 116: p. 1-8 [PMID:28477474]