PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011073350.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C2H2
Protein Properties Length: 271aa    MW: 29692.1 Da    PI: 9.4298
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011073350.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.0001297119123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C++ F ++  L  H++ H
  XP_011073350.1  97 FSCNYCNRKFYSSQALGGHQNAH 119
                     89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.28E-794124No hitNo description
PROSITE profilePS5015711.71897124IPR007087Zinc finger, C2H2
PROSITE patternPS00028099119IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MEPPRLDPCS HSESSSTNSP SSSTCLINNS AKNKSSMLVN YPIPMEEQVQ EQEQIENPDL  60
VLDLTLSRKD LDRNSKPELA LFQTNPPAST ESENRVFSCN YCNRKFYSSQ ALGGHQNAHK  120
RERTIARRGQ RIAGTSFGHH DAAVHRYSSI ASLPLHGSFN RSLGIQVHSM IHKPTYLASP  180
PGNLTVGGLP IYGNPGPPRK PLDQQPAVGR LAVENHQVGQ SSSGGAARFN GGRRFSTAVD  240
GVGGFRWDNN SSHLKTNNQE ELKKLDLSLK L
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011073350.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020548473.11e-119zinc finger protein 1
TrEMBLA0A2G9GFZ17e-96A0A2G9GFZ1_9LAMI; Uncharacterized protein
STRINGXP_002527314.11e-81(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA58272233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.11e-34zinc-finger protein 1