PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011073452.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family CPP
Protein Properties Length: 750aa    MW: 82265.1 Da    PI: 6.2461
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011073452.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR50.54e-16455493240
             TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                      +k+CnCkkskClk+YCeCfaag++C e C C dC+Nk 
  XP_011073452.1 455 ACKRCNCKKSKCLKLYCECFAAGVYCVEPCACIDCFNKP 493
                     589**********************************96 PP
2TCR51.22.5e-16540578139
             TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                     ++k+gCnCkks ClkkYCeC++ g+ Cs +C+Ce+CkN 
  XP_011073452.1 540 RHKRGCNCKKSGCLKKYCECYQGGVGCSINCRCEGCKNA 578
                     589***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.8E-18454495IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163437.01455580IPR005172CRC domain
PfamPF036386.6E-12457492IPR005172CRC domain
SMARTSM011147.5E-18540581IPR033467Tesmin/TSO1-like CXC domain
PfamPF036387.3E-12542578IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 750 aa     Download sequence    Send to blast
MNKVVQMLVD LLEDSPVFNF LNSLSPIQPV KSIHITQTIN PLSFASLPSV FTSPHVGSLR  60
ESRIPRRHQL SDPSKPEFSS DNGSVIVDRN KGKMDTNKLD EQEENLDPGA SNGQVAGEPS  120
CEFAENFQYD RDSLKAKHVE EHACNSSTLV PLVEKTSLRQ LYGGEVNLEA VSQIDQHKEA  180
ASCDWESLIS DTSDLLNLES PNNTESFEKS VDPATTFYRS IKNAMQNMHS ICPVVSGEQV  240
GGRSEPENLL TQPGEGRESM DAESHDIIAG SSITDPSEKM EYEHLSGLYR GMRRRCLVFE  300
MAGVRSKHLE ENSGSDSSVL PQFDGNTTAN LQLVPTKRGN DSSCRVLPGI GLHLNALAAT  360
PKDYKIVNHE ASASGRLLIG PSSSSNFHHP TSDQELFSNI LADNLMEREI DTVESVGLPV  420
EDPCQKSGYM ANEEINQCSP KKKRRRLEQG GEAEACKRCN CKKSKCLKLY CECFAAGVYC  480
VEPCACIDCF NKPVHEDTVL ATRKQIESRN PLAFAPKVIR ASDSRPEVGE DFSKTPASAR  540
HKRGCNCKKS GCLKKYCECY QGGVGCSINC RCEGCKNAFG RKDGSGVLGT DHELEEDELD  600
TTERAVLDGD SQRTTTQSDF KQSMDSAPPA TPSRTGRQLV QPFSSKRKPP RSSSFPSISS  660
TSGFPASQPF GKSSFFPPPP KFDKHFDCVM EDEVPEFLQG GSPVGGIKSS SPNQKRVSPP  720
QRMETSPGLR SSRKLILRSI PSFPSLTTNQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A5e-1845957714120Protein lin-54 homolog
5fd3_B5e-1845957714120Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1439446PKKKRRRL
2440445KKKRRR
3442446KRRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011073452.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011073452.10.0protein tesmin/TSO1-like CXC 2 isoform X4
TrEMBLA0A2G9GVD90.0A0A2G9GVD9_9LAMI; Metallothionein-like protein
STRINGMigut.G00370.1.p0.0(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22780.11e-134Tesmin/TSO1-like CXC domain-containing protein