PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011073629.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB
Protein Properties Length: 237aa    MW: 27478.4 Da    PI: 9.3238
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011073629.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding482.8e-151158148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W +eEd ll+++++++G g W++++ + g+ R++k+c++rw++yl
   XP_011073629.1 11 KGTWIPEEDTLLKKCIEKYGEGKWHLVPMRAGLSRCRKSCRLRWLNYL 58
                     799*******************************************97 PP
2Myb_DNA-binding43.29.4e-1464107146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg + ++E +l+++++k+lG++ W++Ia +++ gRt++++k++w++
   XP_011073629.1  64 RGQFAKDEVDLIIRLHKLLGNR-WSLIAGRLP-GRTANDVKNFWNS 107
                      788999****************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.749662IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-20860IPR009057Homeodomain-like
SuperFamilySSF466891.13E-268105IPR009057Homeodomain-like
SMARTSM007173.2E-131060IPR001005SANT/Myb domain
PfamPF002493.7E-141158IPR001005SANT/Myb domain
CDDcd001675.70E-91358No hitNo description
Gene3DG3DSA:1.10.10.602.7E-2161111IPR009057Homeodomain-like
PROSITE profilePS5129417.43963113IPR017930Myb domain
SMARTSM007171.1E-1163111IPR001005SANT/Myb domain
PfamPF002491.8E-1264107IPR001005SANT/Myb domain
CDDcd001673.62E-869106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MEKNISVGVR KGTWIPEEDT LLKKCIEKYG EGKWHLVPMR AGLSRCRKSC RLRWLNYLKP  60
NIKRGQFAKD EVDLIIRLHK LLGNRWSLIA GRLPGRTAND VKNFWNSQIE KTERTKLKTK  120
VEKIITTTNI LRPRPRIPSN LKVPWPRKIR ETTQSNIGPR TDHEDLENRQ RPSSEADECI  180
RWWSNLLETT NVENGMVADL EKQTGETSTG LHDRDDAFGD FNIDLDVGEL LCFGEEC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-22111117106B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011073629.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011073629.11e-174transcription factor MYB114
SwissprotQ9FNV92e-58MY113_ARATH; Transcription factor MYB113
TrEMBLW8EB732e-82W8EB73_ERYLE; Anthocyanin-activating R2R3 MYB transcription factor
STRINGMigut.L00458.1.p2e-78(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.17e-61myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]