PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011073661.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family HD-ZIP
Protein Properties Length: 242aa    MW: 26773.2 Da    PI: 8.4866
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011073661.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.89e-1999153256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ ++tk q   Lee F+ +++++ ++++eLA++l+L  rqV vWFqNrRa+ k
  XP_011073661.1  99 RKKLRLTKAQSALLEESFKHHSTLNPKQKQELARELKLRPRQVEVWFQNRRARTK 153
                     678899***********************************************98 PP
2HD-ZIP_I/II123.41.1e-3999188191
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     +kk+rl+k q++lLEesF+++++L+p++K+elareL+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke +eL+ +l
  XP_011073661.1  99 RKKLRLTKAQSALLEESFKHHSTLNPKQKQELARELKLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQELK-AL 188
                     69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.25E-1889156IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.2E-1892158IPR009057Homeodomain-like
PROSITE profilePS5007117.47595155IPR001356Homeobox domain
SMARTSM003891.1E-1597159IPR001356Homeobox domain
PfamPF000463.0E-1699153IPR001356Homeobox domain
CDDcd000861.47E-1599156No hitNo description
PROSITE patternPS000270130153IPR017970Homeobox, conserved site
PfamPF021834.3E-10155189IPR003106Leucine zipper, homeobox-associated
SMARTSM003407.5E-23155198IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MGIDDFCQTG LVLGLGLSSP SSSAAAGDQK SKKPAAARKT TEPSLTLSLS GETFDQDSGA  60
SSFSNVSVKR ERETGGEEVE IERVSSRASD EDDDGSNGRK KLRLTKAQSA LLEESFKHHS  120
TLNPKQKQEL ARELKLRPRQ VEVWFQNRRA RTKLKQTEVD CEFLKKCCET LTDENRRLQK  180
ELQELKALKL AQTPLYMQLP AATLTMCPSC ERIGAENAAK STFNMAPKPH FYSPFTNPSA  240
AC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1147155RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011073661.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011073661.11e-179homeobox-leucine zipper protein HAT22 isoform X2
SwissprotP466043e-99HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A2G9H1F91e-134A0A2G9H1F9_9LAMI; Transcription factor HEX
STRINGVIT_00s0732g00010.t011e-124(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.16e-75HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]