PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011073726.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB
Protein Properties Length: 253aa    MW: 29801.4 Da    PI: 8.4559
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011073726.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.47.7e-192370148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd ll+++v+++G g+W+ +a+  g++R +k+c++rw +yl
   XP_011073726.1 23 KGPWTAEEDRLLIQYVELHGEGRWNNVAKLAGLKRNGKSCRLRWVNYL 70
                     79********************************************97 PP
2Myb_DNA-binding521.7e-1676120147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg  T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++
   XP_011073726.1  76 RGQITPHEERIILELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 120
                      7888******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.0051874IPR017930Myb domain
SuperFamilySSF466894.21E-3121117IPR009057Homeodomain-like
SMARTSM007172.4E-172272IPR001005SANT/Myb domain
PfamPF002496.3E-182370IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.9E-252477IPR009057Homeodomain-like
CDDcd001672.03E-122570No hitNo description
PROSITE profilePS5129419.61675125IPR017930Myb domain
SMARTSM007176.4E-1575123IPR001005SANT/Myb domain
PfamPF002497.1E-1476120IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-2478124IPR009057Homeodomain-like
CDDcd001673.66E-1080121No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MSWGVMGEHM MGMWGAMEDG WRKGPWTAEE DRLLIQYVEL HGEGRWNNVA KLAGLKRNGK  60
SCRLRWVNYL RPDLKRGQIT PHEERIILEL HARWGNRWST IARSLPGRTD NEIKNYWRTH  120
FKKKTKSSSD SPEKTRARLL RRQQFHLQQQ LQQQQQQQQQ QQQQHQQDQI IDMTRIMSLL  180
DDSENRSAPG FEYPSGADEH GVLLHSMMNE YAAVAEASNE GILWDSLWNL DDLHGNYMTE  240
RANYQHNLAA TFY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-282312527128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011073726.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ0744435e-69KJ074443.1 Sesamum indicum clone TilSSR_45644 microsatellite Sesame_45644 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011073726.10.0myb-related protein 305
SwissprotP813916e-52MYB05_ANTMA; Myb-related protein 305
TrEMBLA0A2G9FY601e-107A0A2G9FY60_9LAMI; Transcription factor, Myb superfamily
STRINGcassava4.1_013947m1e-105(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.14e-82myb domain protein 305
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]