PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011073746.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family GATA
Protein Properties Length: 283aa    MW: 30955.8 Da    PI: 7.895
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011073746.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.34.5e-18199233135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C +C++ kTp+WR gp g+ktLCnaCG++y++ +l
  XP_011073746.1 199 CLHCQADKTPQWRAGPMGPKTLCNACGVRYKSGRL 233
                     99*****************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.82193229IPR000679Zinc finger, GATA-type
SMARTSM004014.4E-17193247IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.09E-15195256No hitNo description
Gene3DG3DSA:3.30.50.101.9E-14196231IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.65E-13198246No hitNo description
PROSITE patternPS003440199224IPR000679Zinc finger, GATA-type
PfamPF003208.7E-16199233IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MEILDTAAEA CFMVDDDLLD FTLEEGEGEE EEEPTISKRA SASSSSLESS NPAATAFRLD  60
ARSSSFSFVE EELEWLSNKD AFPAVETCFG ILSDNPELIL NQHSPVSVLE KSSSSSNSNT  120
NSNGSAVASC CDSFKVPTNY PVRARSKRRR RRRAGFGDLV SQHCLWSNKV SVKNKQEPSF  180
ALPPLPMLAN GGAGLGRRCL HCQADKTPQW RAGPMGPKTL CNACGVRYKS GRLLPEYRPA  240
SSPTFSSTLH SNSHRKVIEM RKQKQIPMGD GITVNVACKY RVG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1144152RSKRRRRRR
2146151KRRRRR
3146152KRRRRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011073746.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ0676382e-56KJ067638.1 Sesamum indicum clone TilSSR_38839 microsatellite Sesame_38839 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011073745.11e-169GATA transcription factor 1-like
SwissprotQ8LAU92e-48GATA1_ARATH; GATA transcription factor 1
TrEMBLA0A2G9GS871e-108A0A2G9GS87_9LAMI; Uncharacterized protein
STRINGXP_009618081.13e-94(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.14e-43GATA transcription factor 1