PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011073899.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

FAR1

Protein Properties

Length: 231aa MW: 26604.4 Da PI: 9.4123

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011073899.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	64.3	3.4e-20	65	150	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +Y+eYA ++GF +r+ +s+ks+r+g+ ++r + C + + +++ + +++tr++ r gC+a+l vkke+ g+w v k++ +HnH+l+ XP_011073899.1 65 YYEEYAGRAGFLTRVLSSRKSERDGSLISRGLGCRNILHVQKSGSL---SNETREKRRDGCTAMLLVKKESAGRWIVRKFVRDHNHPLV 150 8*******************************999888888776...8899999*****************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.3E-18	65	150	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MTKCHDWADV MQHFLPVDVE DRLDGGGKEM IEASVMADLT SCEVDRKGEP YEGMIFETEA 60 AARAYYEEYA GRAGFLTRVL SSRKSERDGS LISRGLGCRN ILHVQKSGSL SNETREKRRD 120 GCTAMLLVKK ESAGRWIVRK FVRDHNHPLV VSLPKRRPTF DEKDKRIQEL TAELRVKKRL 180 SSAYREQLLI LMKDVENHND HLTSKVQIIR NNLKELEARR QELLNHNKPS S

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011073899.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011073899.1	1e-172	protein FAR-RED IMPAIRED RESPONSE 1 isoform X1
Refseq	XP_011073901.1	1e-172	protein FAR-RED IMPAIRED RESPONSE 1 isoform X1
Refseq	XP_020548482.1	1e-172	protein FAR-RED IMPAIRED RESPONSE 1 isoform X1
TrEMBL	A0A2G9GDY9	1e-129	A0A2G9GDY9_9LAMI; Uncharacterized protein
STRING	Migut.N03107.1.p	1e-119	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13099	17	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	3e-47	FAR1 family protein