PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011074149.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

Trihelix

Protein Properties

Length: 333aa MW: 39253.3 Da PI: 9.1394

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011074149.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	77.5	2.1e-24	65	146	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++qe+++Lie+r ++e ++ +g++ k+lWe vs +mre+g++r++ qCk+kw+nl ryk ++++ ++ s++cp+f++l+ XP_011074149.1 65 QWSNQETRDLIEIRAQLEWDFTAGRRTKNLWEMVSCRMREKGYRRTSDQCKCKWKNLVSRYKGQEASDVNN----SRQCPFFNELH 146 7***************************************************************99984....889****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.991	58	122	IPR017877	Myb-like domain
CDD	cd12203	5.76E-21	64	127	No hit	No description
Pfam	PF13837	5.1E-21	65	147	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence Send to blast
MMYNDAGNVS SSTATPRNPT IPYPLLGHQV HQPIMIPIPP PPFSGVGGGG GDDDDFPRRD 60 ERFPQWSNQE TRDLIEIRAQ LEWDFTAGRR TKNLWEMVSC RMREKGYRRT SDQCKCKWKN 120 LVSRYKGQEA SDVNNSRQCP FFNELHAVFT ARANKMPQSQ LDTKTGTAKG RKRLEKVSED 180 RSHQEFSEEL EDEEEIGVDQ AGKGRAIQKR KAGQEKRQKL GENENYLVPP LPNVNKNNSI 240 LNSLQEMMRN FIMQQQRIDV QWRESMEKRA VERELFEQEW RQKMEKLERE RLMMEQAWRE 300 REEERRLREE SRAQKRDALL TMLLNKLIRN ESP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011074149.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011074149.1	0.0	trihelix transcription factor GT-3b-like
TrEMBL	A0A2G9H9F7	1e-139	A0A2G9H9F7_9LAMI; Transcription factor GT-2
STRING	Migut.E01394.1.p	1e-100	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10133	19	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38250.1	5e-28	Trihelix family protein