PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011074196.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C2H2
Protein Properties Length: 261aa    MW: 29022.1 Da    PI: 9.7622
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011074196.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2224.3e-07109128120
                     EEETTTTEEESSHHHHHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                     ++C++C+k+F+r  nL+ H+
  XP_011074196.1 109 FSCHICNKTFNRYNNLQMHM 128
                     89*****************9 PP
2zf-C2H211.60.00087193215123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y+C +Cgk+   k + ++H +++
  XP_011074196.1 193 YSCRKCGKCLAVKGDWRTHEKNC 215
                     99*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.55E-6100132No hitNo description
SMARTSM003550.083109131IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.845109136IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.4E-5109128IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280111131IPR007087Zinc finger, C2H2
SMARTSM00355120156188IPR015880Zinc finger, C2H2-like
SMARTSM00355100193213IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009813Biological Processflavonoid biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MEGSGSFCFS PNANSLPSTS TAVVQTFDFF AKKTTSASNK NVVDRVGESN VVVDENEDSV  60
VALRIGLPSF CNKGVINSSD YGKKTANSAA ATQYWIPTPA QIVVGFTHFS CHICNKTFNR  120
YNNLQMHMWG HGSEFRRGPD SLKGSQPRAM LGIPCYCCQE GCKNNINHPR AKPLKDFRTL  180
QTHYKRKHGL KRYSCRKCGK CLAVKGDWRT HEKNCGKRWL CICGSDFKHK RSLKDHVASF  240
GSGHGPSCPP TFDRVDGKFL V
Functional Description ? help Back to Top
Source Description
UniProtMay act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat (PubMed:21477081). Plays a role in the regulatory network controlling flavonoid accumulation in endothelium cells during seed development (PubMed:21477081). {ECO:0000269|PubMed:11782451, ECO:0000269|PubMed:21477081}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011074196.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011074196.10.0protein TRANSPARENT TESTA 1
SwissprotQ8VWG31e-104TT1_ARATH; Protein TRANSPARENT TESTA 1
TrEMBLA0A2G9HH991e-127A0A2G9HH99_9LAMI; Uncharacterized protein
STRINGXP_009614226.11e-124(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA132641517
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34790.11e-105C2H2 family protein
Publications ? help Back to Top
  1. Lian J, et al.
    Silencing of BnTT1 family genes affects seed flavonoid biosynthesis and alters seed fatty acid composition in Brassica napus.
    Plant Sci., 2017. 254: p. 32-47
    [PMID:27964783]