PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011074282.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MIKC_MADS
Protein Properties Length: 226aa    MW: 25743.2 Da    PI: 9.7551
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011074282.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.37.1e-271059251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    ri+n++ rqvtfskRrng+lKKA+EL +LCd ev viifsstgkly++++
  XP_011074282.1 10 RIDNSTSRQVTFSKRRNGLLKKAKELGILCDSEVGVIIFSSTGKLYDFAT 59
                    8***********************************************86 PP
2K-box87.42.8e-2981168996
           K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                     +++++a+++q+e+a L++++++Lq+++Rhl+Ge+L+ L++++Lq+Le+qLe sl+ +R +K+++ ++ i+el +k + +++en++L k
  XP_011074282.1  81 NSTSEAKYWQREAAMLRQQLQSLQENHRHLMGEELSGLNVRDLQNLEKQLEMSLRGVRMRKDQVCIDDIQELNRKANLINQENTELYK 168
                     678899******************************************************************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.3E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.188161IPR002100Transcription factor, MADS-box
CDDcd002652.22E-43278No hitNo description
SuperFamilySSF554551.15E-30290IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-27323IPR002100Transcription factor, MADS-box
PfamPF003198.3E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-273859IPR002100Transcription factor, MADS-box
PfamPF014862.6E-2782168IPR002487Transcription factor, K-box
PROSITE profilePS5129714.64786177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KAKELGILCD SEVGVIIFSS TGKLYDFATS  60
SMKSVIERYN KAKEGPHQMA NSTSEAKYWQ REAAMLRQQL QSLQENHRHL MGEELSGLNV  120
RDLQNLEKQL EMSLRGVRMR KDQVCIDDIQ ELNRKANLIN QENTELYKVA YGKRDATRAD  180
STSLITNSLS ISDDPHAPTR LQLCQPQQEN YETLSGATKL GRLQLE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A9e-21178177MEF2C
5f28_B9e-21178177MEF2C
5f28_C9e-21178177MEF2C
5f28_D9e-21178177MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011074282.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020548564.11e-161MADS-box transcription factor 23-like isoform X1
SwissprotQ9SZJ62e-89AGL21_ARATH; Agamous-like MADS-box protein AGL21
TrEMBLA0A1S4D2K81e-121A0A1S4D2K8_TOBAC; MADS-box transcription factor 23-like isoform X6
TrEMBLA0A1U8PCJ81e-121A0A1U8PCJ8_GOSHI; MADS-box transcription factor 23-like isoform X5
STRINGXP_009595408.11e-118(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA6792056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.11e-87AGAMOUS-like 21
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Yu LH, et al.
    Arabidopsis MADS-Box Transcription Factor AGL21 Acts as Environmental Surveillance of Seed Germination by Regulating ABI5 Expression.
    Mol Plant, 2017. 10(6): p. 834-845
    [PMID:28438576]
  3. Qu Y, et al.
    Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]
  4. Sun CH, et al.
    Chrysanthemum MADS-box transcription factor CmANR1 modulates lateral root development via homo-/heterodimerization to influence auxin accumulation in Arabidopsis.
    Plant Sci., 2018. 266: p. 27-36
    [PMID:29241564]