PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011074333.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family GRF
Protein Properties Length: 591aa    MW: 64116.1 Da    PI: 8.3975
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011074333.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC77.11.7e-24208252145
             WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                     d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e 
  XP_011074333.1 208 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKPVEG 252
                     79****************************************985 PP
2QLQ60.54.8e-21141177137
             QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                     ++FT++Q+++L++Q+l+yKy+ an+P+P++Ll +i+k
  XP_011074333.1 141 GPFTPSQWMELEHQALIYKYITANVPIPSYLLNPIRK 177
                     59*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.0E-11141177IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088803.8E-15142176IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.988142177IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.663208252IPR014977WRC domain
PfamPF088797.0E-21209251IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 591 aa     Download sequence    Send to blast
MDFEVVGLDN LVSSNSATAA ASNNGSFALD NTTAENSKPK WYGSGFLKQE RAINEDDFRD  60
FKVAKTSSCG ETLMKIPLQR SNTTSLSEGH QQMLSFSSPT SQTVTFPYYH PTSTGFSRNT  120
GYGSTGINAA SMQGVVSGFR GPFTPSQWME LEHQALIYKY ITANVPIPSY LLNPIRKAFD  180
TAGFSTFPGL RSNSLGWGGF HLGFSNTDPE PGRCRRTDGK KWRCSRDAVA DQKYCERHMN  240
RGRHRSRKPV EGQSGHSATG LTTTNGKPPM ATSSSTSVVP PGGVSNSLGL SHHHQLSNLQ  300
PGSSNHIPGI GNINRSLQDK ENADEAYRHT TVLSMTSPKV SLKDNQFSVP KHQNAYEESS  360
RQEFGLVCSD SLLNPLDRSS SLVNCRNYGT HHNLNDHENK SQHALRQFMD NWPKNQPEQR  420
TAISWPDVDL QPDRTQLSIS IPVVTSDFMS STSSPTNEKL TASPLRLSQE LKMGLGVGTL  480
ASEQNQRQTN WVPISWEPSM GGPLGEVLHT TSNGVADCKN AKPLNLMDSW DNSPRLASSP  540
TGVLQRGAFG SLSNSSAGSS PRAESSKTLD GASLCNGLIG SGLMNPSLPA L
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011074333.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4733689e-51AM473368.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X262323.6, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011074333.20.0growth-regulating factor 6
TrEMBLA0A2G9HUB00.0A0A2G9HUB0_9LAMI; Uncharacterized protein
STRINGEOY156570.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16882357
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.11e-94growth-regulating factor 1