PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011074399.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

WOX

Protein Properties

Length: 231aa MW: 26512.7 Da PI: 8.2132

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011074399.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	67.5	1.7e-21	81	140	3	57
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eq+ +Le l++ r+p+a+++e+++++l +++ ++V++WFqN++a+e++ XP_011074399.1 81 TRWNPTQEQIGILEMLYRGgMRTPNAQQIEQITAQLgkygKIEGKNVFYWFQNHKARERQ 140 7***************99************************************97 PP
2	Wus_type_Homeobox	118.4	3.1e-38	81	142	4	65
Wus_type_Homeobox 4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 tRW+Pt+eQi iLe+ly+ G+rtPn+++i++ita+L +yGkie+kNVfyWFQN+kaRerqkq XP_011074399.1 81 TRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQ 142 8***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	10.414	76	141	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.03E-12	77	146	IPR009057	Homeodomain-like
SMART	SM00389	2.5E-7	78	145	IPR001356	Homeobox domain
CDD	cd00086	3.98E-5	81	142	No hit	No description
Pfam	PF00046	3.3E-19	81	140	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	5.0E-8	82	140	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MKVHHFARGF WEHEPSLGCK RLRPLAPKLV TTPTTTTATT TVNAFDLKSF IRPESGPRKL 60 ESSDFEKKES AQVEAQQAGG TRWNPTQEQI GILEMLYRGG MRTPNAQQIE QITAQLGKYG 120 KIEGKNVFYW FQNHKARERQ KQKRNSLGLT HSLRTSASPF TTTTTTNYLL LSTSKGEEGL 180 DVSSYKRKWR SWGFDECVEE EEEEDSRYCC TEEEGEDRTL KLFPLHPEGR C

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011074399.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ037379	4e-60	KJ037379.1 Sesamum indicum clone TilSSR_8580 microsatellite sesame_8580 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011074399.1	1e-173	WUSCHEL-related homeobox 4 isoform X3
Swissprot	Q6X7J9	1e-70	WOX4_ARATH; WUSCHEL-related homeobox 4
TrEMBL	A0A2G9I8S0	1e-106	A0A2G9I8S0_9LAMI; Uncharacterized protein
STRING	EOY14402	6e-99	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G46480.1	4e-64	WUSCHEL related homeobox 4

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Dolzblasz A, et al. Stem Cell Regulation by Arabidopsis WOX Genes. Mol Plant, 2016. 9(7): p. 1028-39 [PMID:27109605] Guo X, et al. Identification of cyst nematode B-type CLE peptides and modulation of the vascular stem cell pathway for feeding cell formation. PLoS Pathog., 2017. 13(2): p. e1006142 [PMID:28158306] Denis E, et al. WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis. Plant J., 2017. 90(3): p. 560-572 [PMID:28218997] Kucukoglu M,Nilsson J,Zheng B,Chaabouni S,Nilsson O WUSCHEL-RELATED HOMEOBOX4 (WOX4)-like genes regulate cambial cell division activity and secondary growth in Populus trees. New Phytol., 2017. 215(2): p. 642-657 [PMID:28609015] Yamaguchi YL, et al. Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots. Front Plant Sci, 2017. 8: p. 1195 [PMID:28747918]