PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011074400.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family ERF
Protein Properties Length: 155aa    MW: 17380.4 Da    PI: 9.1725
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011074400.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.43.2e-173180255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     y+G+r +k +g+WvAeIr+p   +kr r++lg++ ++  Aa+a++ a  +l+g
  XP_011074400.1 31 PYRGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSSPVAAARAYDTALFYLRG 80
                    69*****99.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.57E-203189IPR016177DNA-binding domain
SMARTSM003802.4E-363194IPR001471AP2/ERF domain
PROSITE profilePS5103221.9043188IPR001471AP2/ERF domain
PRINTSPR003671.8E-113243IPR001471AP2/ERF domain
PfamPF008477.5E-113280IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-293289IPR001471AP2/ERF domain
CDDcd000181.63E-263289No hitNo description
PRINTSPR003671.8E-117090IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0001078Molecular Functiontranscriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MEGACCTTSS TSSSGTEMSK RKQRQHQQDK PYRGIRMRKW GKWVAEIREP NKRSRIWLGS  60
YSSPVAAARA YDTALFYLRG PSARLNFPEC IVEDVVDEPH DLSAAAIRKK ATEVGARVDA  120
LQTAGHARTR SDNLARVPEK PDLNEYPSPE TSEEN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-152888263ATERF1
3gcc_A8e-152888263ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00595DAPTransfer from AT5G67190Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011074400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011074400.11e-113ethylene-responsive transcription factor ERF008-like
SwissprotQ9FH942e-48ERF10_ARATH; Ethylene-responsive transcription factor ERF010
TrEMBLA0A2G9I8R55e-87A0A2G9I8R5_9LAMI; Uncharacterized protein
STRINGMigut.N02735.1.p6e-81(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9432390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67190.12e-50DREB and EAR motif protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]