PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011074463.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB
Protein Properties Length: 234aa    MW: 26111.2 Da    PI: 9.8262
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011074463.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.19.9e-194085147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEd++l ++v+++G ++W++I++++  gR++k+c++rw + 
   XP_011074463.1 40 KGPWSAEEDKILTRLVERYGARNWSLISKYIK-GRSGKSCRLRWCNQ 85
                     79*****************************9.***********985 PP
2Myb_DNA-binding54.52.7e-1794136347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++++ Ede ++ a++++G++ W+tIar ++ gRt++ +k++w++ 
   XP_011074463.1  94 PFSAAEDETILAAHERYGNR-WATIARLLP-GRTDNAVKNHWNST 136
                      79******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.5693590IPR017930Myb domain
SuperFamilySSF466891.4E-3138133IPR009057Homeodomain-like
SMARTSM007171.4E-163988IPR001005SANT/Myb domain
PfamPF002492.8E-184085IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.6E-254193IPR009057Homeodomain-like
CDDcd001674.43E-154284No hitNo description
SMARTSM007173.3E-1591139IPR001005SANT/Myb domain
PROSITE profilePS5129419.85792141IPR017930Myb domain
CDDcd001671.29E-1194137No hitNo description
PfamPF002492.9E-1494136IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.5E-2394140IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MDLFHRSSSV SSSSSDSSSG SSSLSGGKTP RSGDKCERIK GPWSAEEDKI LTRLVERYGA  60
RNWSLISKYI KGRSGKSCRL RWCNQLSPNV EHRPFSAAED ETILAAHERY GNRWATIARL  120
LPGRTDNAVK NHWNSTLKRR YQLQLQQKQR SEQGLKNTAS AGCSLSPVSS DFDEYDPMTA  180
LSLAPPGMGC GAPKERRGES FPVGFWDTMR NVIAREVREY VTTSFPETST GFHL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A4e-41371401104MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011074463.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011074463.11e-174transcription factor MYB44
SwissprotO231603e-56MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A2G9H1241e-115A0A2G9H124_9LAMI; Uncharacterized protein
STRINGXP_009620130.11e-100(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA79502131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.14e-54myb domain protein 73
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]