PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011074481.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

TALE

Protein Properties

Length: 625aa MW: 69247.4 Da PI: 6.9593

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011074481.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29.4	1.4e-09	464	501	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps++++ L++++gL+++qV++WF N R + XP_011074481.1 464 FEHflHPYPSEADKHLLSRQTGLSKNQVSNWFINARVR 501 664459******************************88 PP
2	BELL	98.9	4.1e-32	324	394	1	71
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeq 71 er+++q++k kLl +l+eVd rY +y+eq+q+++ sF+ ++g g a++Yt lA ka+SrhFrc+kdai++ XP_011074481.1 324 ERTDHQRRKIKLLAMLDEVDTRYLRYCEQMQAMVYSFDSIVGQGGAAVYTGLARKAMSRHFRCMKDAIIGE 394 6899****************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	1.3E-50	255	393	IPR006563	POX domain
Pfam	PF07526	5.9E-44	261	391	IPR006563	POX domain
PROSITE profile	PS50071	12.309	442	505	IPR001356	Homeobox domain
SMART	SM00389	1.8E-9	445	509	IPR001356	Homeobox domain
CDD	cd00086	8.55E-12	445	506	No hit	No description
SuperFamily	SSF46689	2.78E-17	446	513	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.4E-28	448	511	IPR009057	Homeodomain-like
Pfam	PF05920	6.7E-18	462	501	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 625 aa Download sequence Send to blast
MNSMSQSFHQ GIYNFPGTHE RAKQQGEWMI REQGGGFEPL PQADLDGQPP VYDTGGMLTE 60 IVNLPWRKAS TEVLDDQIQS SYRWPQKQQL SAAVVNEAAA DELPLINPQI TASSCTTSYL 120 QKLVPSSSDS NLQGFHLISP VPASNMEPQS QFTWIPGSSS RDMEDARTGR VLEGQGLSLS 180 LSSLRNLEAA KFEKITAANG ELFFPGQGIG ASCNNPYGSK DFATNQLLFN PPRLASSSSS 240 SGHGNQVHFG YVESARSTNF LRNSRYLRAA QELLEEFCSV GRGQLKNQKI KNQDRNPNSV 300 PDSGGVATGP SSSKDHHHPL AHAERTDHQR RKIKLLAMLD EVDTRYLRYC EQMQAMVYSF 360 DSIVGQGGAA VYTGLARKAM SRHFRCMKDA IIGEVKVSCE ALGEKDVNVG SGLTKGETPR 420 LKLLEQKYRQ QKALQHMGML DPESWRPQRG LPERAVNILR SWLFEHFLHP YPSEADKHLL 480 SRQTGLSKNQ VSNWFINARV RLWKPMVEQM YQQEFQDQDV QHSPAQQQEE EEPKPQENTN 540 APKPAEKGPA SKTTSEVGGA TSAASYEYRR FMENPEVGLG SDQFGLVGVG AQGGGGEVSL 600 TLGLRNSDNV PSRIGQLSIR DFQAY

Sequence ? help Back to Top

Protein Sequence Length: 625 aa Download sequence Send to blast

MNSMSQSFHQ GIYNFPGTHE RAKQQGEWMI REQGGGFEPL PQADLDGQPP VYDTGGMLTE  60
IVNLPWRKAS TEVLDDQIQS SYRWPQKQQL SAAVVNEAAA DELPLINPQI TASSCTTSYL  120
QKLVPSSSDS NLQGFHLISP VPASNMEPQS QFTWIPGSSS RDMEDARTGR VLEGQGLSLS  180
LSSLRNLEAA KFEKITAANG ELFFPGQGIG ASCNNPYGSK DFATNQLLFN PPRLASSSSS  240
SGHGNQVHFG YVESARSTNF LRNSRYLRAA QELLEEFCSV GRGQLKNQKI KNQDRNPNSV  300
PDSGGVATGP SSSKDHHHPL AHAERTDHQR RKIKLLAMLD EVDTRYLRYC EQMQAMVYSF  360
DSIVGQGGAA VYTGLARKAM SRHFRCMKDA IIGEVKVSCE ALGEKDVNVG SGLTKGETPR  420
LKLLEQKYRQ QKALQHMGML DPESWRPQRG LPERAVNILR SWLFEHFLHP YPSEADKHLL  480
SRQTGLSKNQ VSNWFINARV RLWKPMVEQM YQQEFQDQDV QHSPAQQQEE EEPKPQENTN  540
APKPAEKGPA SKTTSEVGGA TSAASYEYRR FMENPEVGLG SDQFGLVGVG AQGGGGEVSL  600
TLGLRNSDNV PSRIGQLSIR DFQAY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	5e-17	451	509	5	63	Homeobox protein Meis2
3k2a_B	5e-17	451	509	5	63	Homeobox protein Meis2
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression. {ECO:0000269\|PubMed:17873098}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011074481.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ072647	7e-58	KJ072647.1 Sesamum indicum clone TilSSR_43848 microsatellite Sesame_43848 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011074481.1	0.0	BEL1-like homeodomain protein 4
Swissprot	Q94KL5	1e-115	BLH4_ARATH; BEL1-like homeodomain protein 4
TrEMBL	A0A2G9G0C1	0.0	A0A2G9G0C1_9LAMI; Transcription factor MEIS1
STRING	Solyc04g079830.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6072	17	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36870.2	1e-116	BEL1-like homeodomain 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]