PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011074522.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

C2H2

Protein Properties

Length: 538aa MW: 56444.5 Da PI: 9.0279

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011074522.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.1	1.5e-05	69	91	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_011074522.1 69 FVCEICNKGFQRDQNLQLHRRGH 91 89*******************88 PP
2	zf-C2H2	14	0.00015	145	167	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+k + +s+ k H++t+ XP_011074522.1 145 YKCERCSKKYAVHSDWKAHMKTC 167 9********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.8E-5	68	91	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.23E-7	68	91	No hit	No description
Pfam	PF12874	0.0022	69	91	No hit	No description
PROSITE profile	PS50157	10.949	69	91	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.017	69	91	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	71	91	IPR007087	Zinc finger, C2H2
SMART	SM00355	220	110	140	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	6.7E-5	133	166	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.23E-7	140	166	No hit	No description
SMART	SM00355	49	145	165	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 538 aa Download sequence Send to blast
MEMENSSQIP FPAASGESNI PTAGNETKSD QLAETAQPTK KKRSLPGMPD PDAEVIALSP 60 KTLLATNRFV CEICNKGFQR DQNLQLHRRG HNLPWKLRQR TSKEVRKRVY VCPEPTCIHH 120 DPSRALGDLT GIKKHFCRKH GEKKYKCERC SKKYAVHSDW KAHMKTCGTR EYRCDCGTLF 180 SRRDSFITHR AFCDALAQEG ARTQPLAATS SGGDLKVQVL ATPPAASSPP PPPLTPSTGV 240 LSPVLSIQSS AELAPENQAA QLQPSPGTAA LSSSTAIINP TNRATSAMAP GSSSTSSGLV 300 SGRTGILSSI FNASTSAELP QPPTQPASYP GLICAMAGPD HQAIDPISLS LSSSLYGSSS 360 LFSAASEVNP QPQYGSSPQP ALSATALLQK AAQIGATSSS SSFLRGLGLA MPSPSKVQDN 420 ASTMASATSS SNTPLHWTSG VKLEINSLAS GLRLGLSSNE SSVFNGSMMS RSTSLYGNKP 480 LTLDFLGLGV GAGETSSSGL SAFLSSIGGG LDMASASLAG VRRAEDTWDN PADRKPSV

Sequence ? help Back to Top

Protein Sequence Length: 538 aa Download sequence Send to blast

MEMENSSQIP FPAASGESNI PTAGNETKSD QLAETAQPTK KKRSLPGMPD PDAEVIALSP  60
KTLLATNRFV CEICNKGFQR DQNLQLHRRG HNLPWKLRQR TSKEVRKRVY VCPEPTCIHH  120
DPSRALGDLT GIKKHFCRKH GEKKYKCERC SKKYAVHSDW KAHMKTCGTR EYRCDCGTLF  180
SRRDSFITHR AFCDALAQEG ARTQPLAATS SGGDLKVQVL ATPPAASSPP PPPLTPSTGV  240
LSPVLSIQSS AELAPENQAA QLQPSPGTAA LSSSTAIINP TNRATSAMAP GSSSTSSGLV  300
SGRTGILSSI FNASTSAELP QPPTQPASYP GLICAMAGPD HQAIDPISLS LSSSLYGSSS  360
LFSAASEVNP QPQYGSSPQP ALSATALLQK AAQIGATSSS SSFLRGLGLA MPSPSKVQDN  420
ASTMASATSS SNTPLHWTSG VKLEINSLAS GLRLGLSSNE SSVFNGSMMS RSTSLYGNKP  480
LTLDFLGLGV GAGETSSSGL SAFLSSIGGG LDMASASLAG VRRAEDTWDN PADRKPSV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	4e-34	141	207	3	69	Zinc finger protein JACKDAW
5b3h_F	4e-34	141	207	3	69	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269\|PubMed:21571950, ECO:0000269\|PubMed:25035403}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011074522.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011074522.1	0.0	protein indeterminate-domain 2
Swissprot	Q9LVQ7	1e-131	IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBL	A0A2Z7AM57	0.0	A0A2Z7AM57_9LAMI; Zinc finger protein JACKDAW-like
STRING	XP_009612196.1	1e-173	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA103	24	350

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66730.1	1e-112	C2H2-like zinc finger protein

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]