PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011074633.1
Common NameAP3
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MIKC_MADS
Protein Properties Length: 234aa    MW: 27095.8 Da    PI: 9.8932
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011074633.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.86.9e-29959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k+ien++nrqvt+skRrng++KKA+EL vLCda+v+++++sst+kl+ey+s
  XP_011074633.1  9 KKIENQTNRQVTYSKRRNGLFKKAHELTVLCDAKVSILMISSTQKLHEYIS 59
                    68***********************************************86 PP
2K-box93.92.6e-3171169199
           K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                     yq++ +++l+++++e++qq+l+kLk+ ++nL+re+R+++Ge+L++L + e+ +L +++++sl+ iR++K++++ +qi++++kk ++++e++++L 
  XP_011074633.1  71 YQTAATVDLWNSHYEKMQQHLKKLKEVNRNLRREIRQRMGESLNDLGYGEMVNLIEDMDNSLRLIRDRKYKVIGNQIDTSKKKLRNVEEIHRNLA 165
                     78888999**************************************************************************************8 PP

           K-box  96 kkle 99 
                      +++
  XP_011074633.1 166 LEFD 169
                     8775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.4E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.838161IPR002100Transcription factor, MADS-box
CDDcd002652.65E-36280No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.28E-34396IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-27323IPR002100Transcription factor, MADS-box
PfamPF003198.2E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-273859IPR002100Transcription factor, MADS-box
PfamPF014861.5E-1882167IPR002487Transcription factor, K-box
PROSITE profilePS5129715.24184174IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MARGKIQIKK IENQTNRQVT YSKRRNGLFK KAHELTVLCD AKVSILMISS TQKLHEYISP  60
TITTKQLFDQ YQTAATVDLW NSHYEKMQQH LKKLKEVNRN LRREIRQRMG ESLNDLGYGE  120
MVNLIEDMDN SLRLIRDRKY KVIGNQIDTS KKKLRNVEEI HRNLALEFDA RQEDPQYGLV  180
ENEGDYNSVL GFPNGGPRII ALRLPPNHHP HHHHHPTLHS GGGASDLTTF ALLE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-15159159MEF2C
5f28_B2e-15159159MEF2C
5f28_C2e-15159159MEF2C
5f28_D2e-15159159MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the genetic control of flower development. Acts in conjunction with GLOBOSA (glo).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00077ChIP-seqTransfer from AT3G54340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011074633.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM1900750.0KM190075.1 Sesamum indicum cultivar Rajeswari APETALA 3 (AP3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001306615.11e-175floral homeotic protein DEFICIENS
SwissprotP237061e-149DEFA_ANTMA; Floral homeotic protein DEFICIENS
TrEMBLA0A097CK531e-174A0A097CK53_SESIN; APETALA 3
STRINGXP_009794650.11e-135(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23142451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.11e-92MIKC_MADS family protein
Publications ? help Back to Top
  1. Schwarz-Sommer Z, et al.
    Characterization of the Antirrhinum floral homeotic MADS-box gene deficiens: evidence for DNA binding and autoregulation of its persistent expression throughout flower development.
    EMBO J., 1992. 11(1): p. 251-63
    [PMID:1346760]
  2. Sommer H, et al.
    Deficiens, a homeotic gene involved in the control of flower morphogenesis in Antirrhinum majus: the protein shows homology to transcription factors.
    EMBO J., 1990. 9(3): p. 605-13
    [PMID:1968830]
  3. Gallois JL, et al.
    Functional characterization of the plant ubiquitin regulatory X (UBX) domain-containing protein AtPUX7 in Arabidopsis thaliana.
    Gene, 2013. 526(2): p. 299-308
    [PMID:23747397]
  4. Davies B,Egea-Cortines M,de Andrade Silva E,Saedler H,Sommer H
    Multiple interactions amongst floral homeotic MADS box proteins.
    EMBO J., 1996. 15(16): p. 4330-43
    [PMID:8861961]