PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011074760.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family Trihelix
Protein Properties Length: 616aa    MW: 68046.7 Da    PI: 6.3457
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011074760.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix99.52.8e-3158142187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW++qe+laL+++r++m+ ++r+++lk+plWeevs+km+e gf+rs+k+Ckek+en+ k++k++k+g+ ++   + +t+++fdqlea
  XP_011074760.1  58 RWPRQETLALLKIRSDMDVAFRDASLKGPLWEEVSRKMAELGFQRSAKKCKEKFENVYKYHKRTKDGRASK--SDGKTYRFFDQLEA 142
                     8********************************************************************97..45567*******85 PP
2trihelix104.86.1e-33434519187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW+k ev+aLi++r++++ +++++  k+plWee+s+ m++ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+a
  XP_011074760.1 434 RWPKAEVQALINLRTSLDLKYQENGPKGPLWEEISAGMAKLGYNRSSKRCKEKWENINKYFKKVKESNKKR-AEDSKTCPYFHQLDA 519
                     8*********************************************************************8.89999********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.87651115IPR017877Myb-like domain
SMARTSM007170.007955117IPR001005SANT/Myb domain
PfamPF138373.9E-2057143No hitNo description
CDDcd122031.49E-2657122No hitNo description
SMARTSM007173.8E-4431493IPR001005SANT/Myb domain
PfamPF138372.6E-23433520No hitNo description
CDDcd122036.02E-30433498No hitNo description
Gene3DG3DSA:1.10.10.604.8E-4433490IPR009057Homeodomain-like
PROSITE profilePS500907.445433491IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 616 aa     Download sequence    Send to blast
MLGVSGLMGS SGGDGAATAA AAEPHESGGA SGGSSEVGAS SSMIPTAEDS HERSGGNRWP  60
RQETLALLKI RSDMDVAFRD ASLKGPLWEE VSRKMAELGF QRSAKKCKEK FENVYKYHKR  120
TKDGRASKSD GKTYRFFDQL EALENAPPPP FTPPPPRPQP PPSTAAPPMP TNATNLPMPS  180
HITVSSTSPN PVSVAPPAQT ANNPINASAL FHPSQLPQLQ PPPPAAVNAS NPPQTQPFQT  240
SHPHMSLMSN STSTSSTSSD EDIQRRRGRK RKWKDFFQRL MKDVIHKQEE LQKKFLDTLE  300
KRERERMARE EAWRVQEMSR MNREHELLVQ ERSIAAAKDA AVIAFLQKVT EQHNLQVPIG  360
NSTTAPPPMQ VQPPENPQPP WQPPPPPPPQ PQQSTVPPPP AAPGPIVTVT PTKAIETSKT  420
DNGGDTCVSA SSSRWPKAEV QALINLRTSL DLKYQENGPK GPLWEEISAG MAKLGYNRSS  480
KRCKEKWENI NKYFKKVKES NKKRAEDSKT CPYFHQLDAI YKEKAKNDVV GSFNPMKPEN  540
AMVPIMARPE QQWPLGEQQQ QDSAMPDQDD HDNDSYNNND HEEDDDGDEE DEDDEGGSYE  600
IVTNKQPSSA TNTTAE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1265271RRGRKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011074760.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011074760.10.0trihelix transcription factor GT-2-like
TrEMBLA0A2G9GE440.0A0A2G9GE44_9LAMI; Transcription factor GT-2
STRINGXP_009618661.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24022459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.16e-57Trihelix family protein