PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011075030.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

TCP

Protein Properties

Length: 304aa MW: 32431.1 Da PI: 10.5479

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011075030.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	131.5	8e-41	87	232	3	119
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg........ 88 ++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++ ++s +ss + s++ XP_011075030.1 87 AAKKPSKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFStLNVSLRSSRTTISAPpsksaplf 181 5799****************************************************************999866666666664444455566777 PP TCP 89 ....................kaaksaakskksqksaasalnlakesrakar 119 + ++++ +k++ + +++ + a r++ar XP_011075030.1 182 vggapsmlgfphqltsianfGQDPDENYTKRRFRGDTTSSTSATPGRNSAR 232 777777777777776666663333333333333333333333333443333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.3E-38	92	236	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.705	92	146	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence Send to blast
MQFMELPAQK QGNSSNSGHH EAASSLQLLS PHRYHQSQEP GSGSGLAPPN GPFMGSISAQ 60 QSRNLDVSSS SSTPTTANRN DSVTNKAAKK PSKDRHTKVD GRGRRIRMPA LCAARVFQLT 120 RELGHKSDGE TIEWLLQQAE PAIIAATGTG TIPANFSTLN VSLRSSRTTI SAPPSKSAPL 180 FVGGAPSMLG FPHQLTSIAN FGQDPDENYT KRRFRGDTTS STSATPGRNS ARDQEQGSDT 240 KPALFQASSY IPAPPIWAVA PAAASIGNAF WMLPVSGGAG HTVEDVLQLH AENRRFRVFW 300 SGSI

Functional Description ? help Back to Top
Source	Description
UniProt	Can specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269\|PubMed:21297037}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011075030.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011096575.1	1e-117	LOW QUALITY PROTEIN: transcription factor TCP23
Swissprot	Q9C518	2e-60	TCP8_ARATH; Transcription factor TCP8
TrEMBL	A0A2Z7BFH2	1e-131	A0A2Z7BFH2_9LAMI; TCP transcription factor 12
STRING	Migut.C01285.1.p	1e-107	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA248	24	201

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	4e-57	TCP family protein

Publications ? help Back to Top
Mazur MJ, et al. Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci. Front Plant Sci, 2017. 8: p. 2043 [PMID:29250092]