PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011075147.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C3H
Protein Properties Length: 240aa    MW: 24781.2 Da    PI: 10.1221
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011075147.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.43.8e-063659225
                    -S---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                    k ++C  f+ +  C++G++C+F H
  XP_011075147.1 36 KSKPCTKFFSMAGCPFGENCHFLH 59
                    77899999999************* PP
2zf-CCCH37.15.4e-12207231126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +kt+lC +f++ G C +GdrC+FaHg
  XP_011075147.1 207 FKTKLCENFSK-GSCTFGDRCHFAHG 231
                     69*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.993461IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.6243462IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-63560IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-63659IPR000571Zinc finger, CCCH-type
SuperFamilySSF547913.94E-1593170IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.101.3E-1599168IPR004088K Homology domain, type 1
SMARTSM003223.7E-1299169IPR004087K Homology domain
PROSITE profilePS5008415.221100164IPR004088K Homology domain, type 1
CDDcd001051.85E-13102164No hitNo description
PfamPF000133.8E-12102166IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.105.2E-16203237IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.2E-8205236IPR000571Zinc finger, CCCH-type
SMARTSM003563.8E-7206232IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.474206233IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-9207231IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MDTRKRGRAE FGVNAHGGFK KSKPEIDSLS SGIGSKSKPC TKFFSMAGCP FGENCHFLHY  60
FPGGYNAVAQ MMNLTPAIPG CFAARAEPPV PGPAGSFGAS ATAKISVDAS LAGAIIGKGG  120
VNSKQISRQT GAKLAIREHE TDPNLRNIEL EGTFEQIKQA STMVRELIVS IGSVGGPGKA  180
IGRPGGHAAP GKAIGGHGGH AAPGSNFKTK LCENFSKGSC TFGDRCHFAH GAAELRKTGI
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011075147.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020549217.11e-160zinc finger CCCH domain-containing protein 52 isoform X1
SwissprotQ9FG306e-98C3H52_ARATH; Zinc finger CCCH domain-containing protein 52
TrEMBLA0A2P5BTU01e-105A0A2P5BTU0_PARAD; Polyribonucleotide nucleotidyltransferase
TrEMBLA0A2P5E6331e-105A0A2P5E633_TREOI; Polyribonucleotide nucleotidyltransferase
STRINGXP_010520038.11e-107(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8452498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.12e-96C3H family protein
Publications ? help Back to Top
  1. Yan Z,Jia J,Yan X,Shi H,Han Y
    Arabidopsis KHZ1 and KHZ2, two novel non-tandem CCCH zinc-finger and K-homolog domain proteins, have redundant roles in the regulation of flowering and senescence.
    Plant Mol. Biol., 2017. 95(6): p. 549-565
    [PMID:29076025]