PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011075275.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family NAC
Protein Properties Length: 188aa    MW: 22167.5 Da    PI: 10.1445
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011075275.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM121.95.6e-38261541128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     lp+Gf+F+ td el+  yL kk+++++l+l + i+evd+y++  P+ L +++k  +ek+wyfF++r +kya+g+r+ r t  gyWk+tg d +v 
  XP_011075275.1  26 LPQGFKFRRTDLELLEAYLIKKLKNQPLPL-NRIREVDLYSFaTPQALTANIKLiREKKWYFFTPRFRKYANGDRPDRGTPGGYWKTTGADIKVR 119
                     799***************************.77*******9878****9655544889************************************* PP

             NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     ++ g + g+k+tL f++g+   gekt+W+mhey +
  XP_011075275.1 120 NHVGLVLGTKRTLCFHEGKPMAGEKTNWIMHEYIV 154
                     *9999****************************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-4523178IPR003441NAC domain
PROSITE profilePS5100544.33526178IPR003441NAC domain
PfamPF023657.6E-2027153IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MERKGKEKEI ESDWIYNSED EYFSSLPQGF KFRRTDLELL EAYLIKKLKN QPLPLNRIRE  60
VDLYSFATPQ ALTANIKLIR EKKWYFFTPR FRKYANGDRP DRGTPGGYWK TTGADIKVRN  120
HVGLVLGTKR TLCFHEGKPM AGEKTNWIMH EYIVDRPTTP HNKPRKLDEW VLCKVFLRNV  180
GQKKDDSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-392518416171NO APICAL MERISTEM PROTEIN
1ut4_B2e-392518416171NO APICAL MERISTEM PROTEIN
1ut7_A2e-392518416171NO APICAL MERISTEM PROTEIN
1ut7_B2e-392518416171NO APICAL MERISTEM PROTEIN
3swm_A3e-392518419174NAC domain-containing protein 19
3swm_B3e-392518419174NAC domain-containing protein 19
3swm_C3e-392518419174NAC domain-containing protein 19
3swm_D3e-392518419174NAC domain-containing protein 19
3swp_A3e-392518419174NAC domain-containing protein 19
3swp_B3e-392518419174NAC domain-containing protein 19
3swp_C3e-392518419174NAC domain-containing protein 19
3swp_D3e-392518419174NAC domain-containing protein 19
4dul_A2e-392518416171NAC domain-containing protein 19
4dul_B2e-392518416171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abscisic acid-mediated stomatal closure (PubMed:25005917). Regulates the expression of NCED1, a gene involved in the biosynthesis of abscisic acid (ABA) (PubMed:25005917). Required for the stomatal closure induced by the bacterial pathogen Pseudomonas syringae pv tomato DC3000, but not for stomatal reopening (PubMed:25005917). {ECO:0000269|PubMed:25005917}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011075275.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), dehydration and wounding. {ECO:0000269|PubMed:25005917}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011075275.11e-139NAC transcription factor 32-like
SwissprotQ9SQL03e-40JA2_SOLLC; NAC domain-containing protein JA2
TrEMBLA0A2G9GNE43e-63A0A2G9GNE4_9LAMI; Uncharacterized protein
STRINGEOY092709e-46(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.25e-41NAC domain containing protein 47
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]