PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011075334.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family HSF
Protein Properties Length: 245aa    MW: 28115.8 Da    PI: 7.1326
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011075334.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.26.1e-34271182102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl k+y ++ed++++e+isw+ +g++fvv+++ efa+++Lp+ Fkhsnf+SFvRQLn+YgF+kv +++         weF+++ F+kg+++ l++
  XP_011075334.1  27 FLLKTYMLVEDPATDEVISWNGDGTAFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATTR---------WEFSNDMFHKGERDRLCE 112
                     9****************************************************************999.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i+r+k 
  XP_011075334.1 113 IHRRKA 118
                     ***985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.3E-3519111IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.8E-5223116IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.79E-3223116IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.3E-182750IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.2E-3027116IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-186577IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406690IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-187890IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MESSSDQSHH GKGLVEYVMR KAAPPPFLLK TYMLVEDPAT DEVISWNGDG TAFVVWQPAE  60
FARDLLPTLF KHSNFSSFVR QLNTYGFRKV ATTRWEFSND MFHKGERDRL CEIHRRKAWS  120
HKPQPNVQLQ AAQKDSLDND DQKSSSTSSS SEFTILVDEN KRLKKENGVL NSELGIMKRK  180
CKELLDLVAI YGVNSKKMEE EEEENNEGPK LFGVRLEVEG EMLEKKRKRA EISESARLIL  240
SQSCK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-192511618120Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00305DAPTransfer from AT2G41690Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011075334.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ0456932e-56KJ045693.1 Sesamum indicum clone TilSSR_16894 microsatellite Sesame_16894 sequence.
GenBankKJ0506572e-56KJ050657.1 Sesamum indicum clone TilSSR_21858 microsatellite Sesame_21858 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011075334.10.0heat stress transcription factor B-3 isoform X1
SwissprotO222302e-73HSFB3_ARATH; Heat stress transcription factor B-3
TrEMBLA0A251NAD01e-112A0A251NAD0_PRUPE; Uncharacterized protein
STRINGXP_008244246.11e-112(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44232241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.16e-71heat shock transcription factor B3